iBMQ: a R/Bioconductor package for integrated Bayesian modeling of eQTL data. - Greg C. Imholte; Marie-Pier Scott-Boyer; Aurélie Labbe; Christian F. Deschepper; Raphael Gottardo (Bioinform., 2013)

Multi-omics integration - a comparison of unsupervised clustering methodologies. - Giulia Tini; Luca Marchetti; Corrado Priami; Marie-Pier Scott-Boyer (Briefings Bioinform., 2019)

KibioR & Kibio: a new architecture for next-generation data querying and sharing in big biology. - Régis Ongaro-Carcy; Marie-Pier Scott-Boyer; Adrien Dessemond; François Belleau; Mickaël Leclercq; Olivier Périn; Arnaud Droit (Bioinform., 2021)

GWENA: gene co-expression networks analysis and extended modules characterization in a single Bioconductor package. - Gwenaëlle G. Lemoine; Marie-Pier Scott-Boyer; Bathilde Ambroise; Olivier Périn; Arnaud Droit (BMC Bioinform., 2021)

timeOmics: an R package for longitudinal multi-omics data integration. - Antoine Bodein; Marie-Pier Scott-Boyer; Olivier Périn; Kim-Anh Lê Cao; Arnaud Droit (Bioinform., 2022)

Use of Elasticsearch-based business intelligence tools for integration and visualization of biological data. - Marie-Pier Scott-Boyer; Pascal Dufour; François Belleau; Régis Ongaro-Carcy; Clément Plessis; Olivier Périn; Arnaud Droit (Briefings Bioinform., 2023)

Improving drug repositioning with negative data labeling using large language models. - Milan Picard; Mickaël Leclercq; Antoine Bodein; Marie-Pier Scott-Boyer; Olivier Périn; Arnaud Droit (J. Cheminformatics, 2025)