A First Step towards Learning which uORFs Regulate Gene Expression. - Selpi; Christopher H. Bryant; Graham J. L. Kemp; Marija Cvijovic (J. Integr. Bioinform., 2006)

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation. - Marija Cvijovic; Daniel Dalevi; Elizabeth Bilsland; Graham J. L. Kemp; Per Sunnerhagen (BMC Bioinform., 2007)

BioMet Toolbox: genome-wide analysis of metabolism. - Marija Cvijovic; Roberto Olivares-Hernández; Rasmus Agren; Niklas Dahr; Wanwipa Vongsangnak; Intawat Nookaew; Kiran Raosaheb Patil; Jens Nielsen (Nucleic Acids Res., 2010)

yApoptosis: yeast apoptosis database. - Kwanjeera Wanichthanarak; Marija Cvijovic; Andrea Molt; Dina Petranovic (Database J. Biol. Databases Curation, 2013)

Single-cell study links metabolism with nutrient signaling and reveals sources of variability. - Niek Welkenhuysen; Johannes Borgqvist; Mattias Backman; Loubna Bendrioua; Mattias Goksör; Caroline Beck Adiels; Marija Cvijovic; Stefan Hohmann (BMC Syst. Biol., 2017)

The synergy of damage repair and retention promotes rejuvenation and prolongs healthy lifespans in cell lineages. - Barbara Schnitzer; Johannes Borgqvist; Marija Cvijovic (PLoS Comput. Biol., 2020)

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism. - Linnea Österberg; Iván Domenzain; Julia Münch; Jens Nielsen; Stefan Hohmann; Marija Cvijovic (PLoS Comput. Biol., 2021)

Scalable and flexible inference framework for stochastic dynamic single-cell models. - Sebastian Persson; Niek Welkenhuysen; Sviatlana Shashkova; Samuel Wiqvist; Patrick Reith; Gregor W. Schmidt; Umberto Picchini; Marija Cvijovic (PLoS Comput. Biol., 2022)

Multi-scale model suggests the trade-off between protein and ATP demand as a driver of metabolic changes during yeast replicative ageing. - Barbara Schnitzer; Linnea Österberg; Iro Skopa; Marija Cvijovic (PLoS Comput. Biol., 2022)

Network medicine: facilitating a new view on complex diseases. - Marija Cvijovic; Annikka Polster (Frontiers Bioinform., 2023)