A Web-based database of genetic association studies in cutaneous melanoma enhanced with network-driven data exploration tools. - Emmanouil Athanasiadis; Kyriaki Antonopoulou; Foteini Chatzinasiou; Christina M. Lill; Marilena M. Bourdakou; Argiris Sakellariou; Katerina Kypreou; Irene Stefanaki; Evangelos Evangelou; John P. A. Ioannidis; Lars Bertram; Alexander J. Stratigos; et al. (Database J. Biol. Databases Curation, 2014)

GeneStoryTeller: a mobile app for quick and comprehensive information retrieval of human genes. - Stergiani V. Eleftheriou; Marilena M. Bourdakou; Emmanouil I. Athanasiadis; George M. Spyrou (Database J. Biol. Databases Curation, 2015)

ZoomOut: Analyzing Multiple Networks as Single Nodes. - Emmanouil I. Athanasiadis; Marilena M. Bourdakou; George M. Spyrou (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Bioinformatics methods in drug repurposing for Alzheimer's disease. - John C. Siavelis; Marilena M. Bourdakou; Emmanouil I. Athanasiadis; George M. Spyrou; Konstantina S. Nikita (Briefings Bioinform., 2016)

Ανάπτυξη μεθόδων βιοπληροφορικής για την ανάδειξη δικτυακών υπογραφών με σκοπό την κατανόηση μοριακών μηχανισμών και την διερεύνηση υποψήφιων φαρμάκων - Marilena M. Bourdakou (2016)

Informed walks: whispering hints to gene hunters inside networks' jungle. - Marilena M. Bourdakou; George M. Spyrou (BMC Syst. Biol., 2017)

D-Map: Random Walking on Gene Network Inference Maps Towards differential Avenue Discovery. - Emmanouil Athanasiadis; Marilena M. Bourdakou; George M. Spyrou (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches. - Anastasis Oulas; George Minadakis; Margarita Zachariou; Kleitos Sokratous; Marilena M. Bourdakou; George M. Spyrou (Briefings Bioinform., 2019)

PathWalks: identifying pathway communities using a disease-related map of integrated information. - Evangelos Karatzas; Margarita Zachariou; Marilena M. Bourdakou; George Minadakis; Anastasis Oulas; George Kolios; Alex Delis; George M. Spyrou (Bioinform., 2020)

Computational insights on the molecular mechanisms across breast cancer progression combining gene differential expression and co-expression. - Emmanouil K. Ikonomakis; Marilena M. Bourdakou; George Kolios; Michael N. Vrahatis; George M. Spyrou (BHI, 2021)

Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19. - Marios Tomazou; Marilena M. Bourdakou; George Minadakis; Margarita Zachariou; Anastasis Oulas; Evangelos Karatzas; Eleni M. Loizidou; Andrea C. Kakouri; Christiana C. Christodoulou; Kyriaki Savva; Maria Zanti; Anna Onisiforou; et al. (Briefings Bioinform., 2021)