Best templates outperform homology models in predicting the impact of mutations on protein stability. - Marina A. Pak; Dmitry N. Ivankov (Bioinform., 2022)

Matcha: Multi-Stage Riemannian Flow Matching for Accurate and Physically Valid Molecular Docking. - Daria Frolova; Talgat Daulbaev; Egor Sevriugov; Sergei A. Nikolenko; Dmitry N. Ivankov; Ivan V. Oseledets; Marina A. Pak (CoRR, 2025)