PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. - Jaime Huerta-Cepas; Salvador Capella-Gutiérrez; Leszek P. Pryszcz; Ivan Andreevich Denisov; Diego Kormes; Marina Marcet-Houben; Toni Gabaldón (Nucleic Acids Res., 2011)

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. - Jaime Huerta-Cepas; Salvador Capella-Gutiérrez; Leszek P. Pryszcz; Marina Marcet-Houben; Toni Gabaldón (Nucleic Acids Res., 2014)

EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes. - Marina Marcet-Houben; Toni Gabaldón (Bioinform., 2020)

PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. - Diego Fuentes; Manuel Molina; Uciel Chorostecki; Salvador Capella-Gutiérrez; Marina Marcet-Houben; Toni Gabaldón (Nucleic Acids Res., 2022)

The Quest for Orthologs orthology benchmark service in 2022. - Yannis Nevers; Tamsin E. M. Jones; Dushyanth Jyothi; Bethan Yates; Meritxell Ferret; Laura Portell-Silva; Laia Codó; Salvatore Cosentino; Marina Marcet-Houben; Anna Vlasova; Laetitia Poidevin; Arnaud Kress; et al. (Nucleic Acids Res., 2022)