ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants. - Emira Cherif; Fatou Seck Thiam; Mohammad Salma; Georgina Rivera-Ingraham; Fabienne Justy; Theo Deremarque; Damien Breugnot; Jean-Claude Doudou; Rodolphe E. Gozlan; Marine Combe (Bioinform., 2022)