Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. - Azadeh Yazdanpanah; Ghassan Hamarneh; Benjamin Smith 002; Marinko Sarunic (MICCAI (1), 2009)

Optic Nerve Head Registration Via Hemispherical Surface and Volume Registration. - Eli Gibson; Mei Young; Marinko Sarunic; Mirza Faisal Beg (IEEE Trans. Biomed. Eng., 2010)

Evaluating the scalability of high-performance, Fourier-Domain Optical Coherence Tomography on GPGPUs and FPGAs. - Lesley Shannon; Jian Li 004; Mohammad Reza Mohammadnia; Marinko Sarunic (ACSCC, 2011)

Scalable, High Performance Fourier Domain Optical Coherence Tomography: Why FPGAs and Not GPGPUs. - Jian Li 004; Marinko Sarunic; Lesley Shannon (FCCM, 2011)

Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach. - Azadeh Yazdanpanah; Ghassan Hamarneh; Benjamin R. Smith; Marinko Sarunic (IEEE Trans. Medical Imaging, 2011)

On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping. - Gavin Weiguang Ding; Eric Lin; Amanda Ribeiro; Marinko V. Sarunic; Glen F. Tibbits; Mirza Faisal Beg (EMBC, 2013)

Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images. - Gavin Weiguang Ding; Mei Young; Serge Bourgault; Sieun Lee; David A. Albiani; Andrew W. Kirker; Farzin Forooghian; Marinko V. Sarunic; Andrew B. Merkur; Mirza Faisal Beg (EMBC, 2013)

Quantitative Evaluation of Transform Domains for Compressive Sampling-Based Recovery of Sparsely Sampled Volumetric OCT Images. - Andy Bo Wu; Evgeniy Lebed; Marinko Sarunic; Mirza Faisal Beg (IEEE Trans. Biomed. Eng., 2013)

Automatic Cycle Averaging for Denoising Approximately Periodic Spatiotemporal Signals. - Gavin Weiguang Ding; Eric Lin; Amanda Ribeiro; Marinko V. Sarunic; Glen F. Tibbits; Mirza Faisal Beg (IEEE Trans. Medical Imaging, 2014)

Exact Surface Registration of Retinal Surfaces From 3-D Optical Coherence Tomography Images. - Sieun Lee; Evgeniy Lebed; Marinko V. Sarunic; Mirza Faisal Beg (IEEE Trans. Biomed. Eng., 2015)

Multiple instance learning for age-related macular degeneration diagnosis in optical coherence tomography images. - Donghuan Lu; Gavin Weiguang Ding; Andrew B. Merkur; Marinko V. Sarunic; Mirza Faisal Beg (ISBI, 2017)

Retinal Fluid Segmentation and Detection in Optical Coherence Tomography Images using Fully Convolutional Neural Network. - Donghuan Lu; Morgan Heisler; Sieun Lee; Gavin Weiguang Ding; Marinko V. Sarunic; Mirza Faisal Beg (CoRR, 2017)

Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework. - Sieun Lee; Nicolas Charon; Benjamin Charlier; Karteek Popuri; Evgeniy Lebed; Marinko V. Sarunic; Alain Trouvé; Mirza Faisal Beg (Medical Image Anal., 2017)

Transfer Learning with U-Net type model for Automatic Segmentation of Three Retinal Layers In Optical Coherence Tomography Images. - Ivana Zadro Matovinovic; Sven Loncaric; Julian Lo; Morgan Heisler; Marinko Sarunic (ISPA, 2019)

Deep learning vessel segmentation and quantification of the foveal avascular zone using commercial and prototype OCT-A platforms. - Morgan Heisler; Forson Chan; Zaid Mammo; Chandrakumar Balaratnasingam; Pavle Prentasic; Gavin Docherty; MyeongJin Ju; Sanjeeva Rajapakse; Sieun Lee; Andrew B. Merkur; Andrew W. Kirker; David A. Albiani; et al. (CoRR, 2019)

Cascaded Deep Neural Networks for Retinal Layer Segmentation of Optical Coherence Tomography with Fluid Presence. - Donghuan Lu; Morgan Heisler; Da Ma; Setareh Dabiri; Sieun Lee; Gavin Weiguang Ding; Marinko V. Sarunic; Mirza Faisal Beg (CoRR, 2019)

Deep-learning based multiclass retinal fluid segmentation and detection in optical coherence tomography images using a fully convolutional neural network. - Donghuan Lu; Morgan Heisler; Sieun Lee; Gavin Weiguang Ding; Eduardo Navajas; Marinko V. Sarunic; Mirza Faisal Beg (Medical Image Anal., 2019)

RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. - Hrvoje Bogunovic; Freerk G. Venhuizen; Sophie Klimscha; Stefanos Apostolopoulos; Alireza Bab-Hadiashar; Ulas Bagci; Mirza Faisal Beg; Loza Bekalo; Qiang Chen 004; Carlos Ciller; Karthik Gopinath; Amirali K. Gostar; et al. (IEEE Trans. Medical Imaging, 2019)

Cascade Dual-branch Deep Neural Networks for Retinal Layer and fluid Segmentation of Optical Coherence Tomography Incorporating Relative Positional Map. - Da Ma; Donghuan Lu; Morgan Heisler; Setareh Dabiri; Sieun Lee; Gavin Weiguang Ding; Marinko V. Sarunic; Mirza Faisal Beg (MIDL, 2020)

Microvasculature Segmentation and Inter-capillary Area Quantification of the Deep Vascular Complex using Transfer Learning. - Julian Lo; Morgan Heisler; Vinicius Vanzan; Sonja Karst; Ivana Zadro Matovinovic; Sven Loncaric; Eduardo V. Navajas; Mirza Faisal Beg; Marinko V. Sarunic (CoRR, 2020)

Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellar cortex of the Tc1 mouse model of down syndrome - a comprehensive morphometric analysis with active staining contrast-enhanced MRI. - Da Ma; Manuel Jorge Cardoso; Maria A. Zuluaga; Marc Modat; Nick M. Powell; Frances K. Wiseman; Jon O. Cleary; Benjamin Sinclair; Ian F. Harrison; Bernard Siow; Karteek Popuri; Sieun Lee; et al. (NeuroImage, 2020)

Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. - Timothy T. L. Yu; Da Ma; Jayden Cole; MyeongJin Ju; Mirza Faisal Beg; Marinko V. Sarunic (ISPA, 2021)

LF-UNet - A novel anatomical-aware dual-branch cascaded deep neural network for segmentation of retinal layers and fluid from optical coherence tomography images. - Da Ma; Donghuan Lu; Shuo Chen; Morgan Heisler; Setareh Dabiri; Sieun Lee; Hyunwoo Lee 007; Gavin Weiguang Ding; Marinko V. Sarunic; Mirza Faisal Beg (Comput. Medical Imaging Graph., 2021)

Domain Adaptation via CycleGAN for Retina Segmentation in Optical Coherence Tomography. - Ricky Chen; Timothy T. L. Yu; Gavin Xu; Da Ma; Marinko V. Sarunic; Mirza Faisal Beg (CoRR, 2021)

Clinical explainable differential diagnosis of polypoidal choroidal vasculopathy and age-related macular degeneration using deep learning. - Da Ma; Meenakshi Kumar; Vikas Khetan; Parveen Sen; Muna Bhende; Shuo Chen; Timothy T. L. Yu; Sieun Lee; Eduardo V. Navajas; Joanne A. Matsubara; Myeong Jin Ju; Marinko V. Sarunic; et al. (Comput. Biol. Medicine, 2022)

Segmentation-guided domain adaptation and data harmonization of multi-device retinal optical coherence tomography using cycle-consistent generative adversarial networks. - Shuo Chen; Da Ma; Sieun Lee; Timothy T. L. Yu; Gavin Xu; Donghuan Lu; Karteek Popuri; Myeong Jin Ju; Marinko V. Sarunic; Mirza Faisal Beg (Comput. Biol. Medicine, 2023)

PseudoSegRT: efficient pseudo-labelling for intraoperative OCT segmentation. - Yu Huang; Riaz Asaria; Danail Stoyanov; Marinko Sarunic; Sophia Bano (Int. J. Comput. Assist. Radiol. Surg., 2023)

Automated Retinal Layer and Fluid Segmentation and Cross-sectional Analysis using Spectral Domain Optical Coherence Tomography Images for Diabetic Retinopathy. - S. Chen; Da Ma; M. Raviselvan; S. Sundaramoorthy; Karteek Popuri; Myeong Jin Ju; Marinko Sarunic; D. Ratra; Mirza Faisal Beg (CoRR, 2025)