Biologistics and the Struggle for Efficiency: Concepts and Perspectives. - Dirk Helbing; Andreas Deutsch; Stefan Diez; Karsten Peters; Yannis Kalaidzidis; Kathrin Padberg-Gehle; Stefan Lämmer; Anders Johansson; Georg Breier; Frank Schulze; Marino Zerial (Adv. Complex Syst., 2009)

A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information. - Nikolay Samusik; Yannis Kalaidzidis; Marino Zerial (BMC Bioinform., 2009)

Revealing Molecular Mechanisms by Integrating High-Dimensional Functional Screens with Protein Interaction Data. - Angela Simeone; Giovanni Marsico; Claudio Collinet; Thierry Galvez; Yannis Kalaidzidis; Marino Zerial; Andreas Beyer (PLoS Comput. Biol., 2014)

Automatic recognition and characterization of different non-parenchymal cells in liver tissue. - Hernán Morales-Navarrete; Hidenori Nonaka; Fabian Segovia-Miranda; Marino Zerial; Yannis Kalaidzidis (ISBI, 2016)

Prediction of Multiple 3D Tissue Structures Based on Single-Marker Images Using Convolutional Neural Networks. - Hernán Morales-Navarrete; Fabian Segovia-Miranda; Marino Zerial; Yannis Kalaidzidis (ICIP, 2019)

Resilience of three-dimensional sinusoidal networks in liver tissue. - Jens Karschau; André Scholich; Jonathan Wise; Hernán Morales-Navarrete; Yannis Kalaidzidis; Marino Zerial; Benjamin M. Friedrich (PLoS Comput. Biol., 2020)

Quantification of nematic cell polarity in three-dimensional tissues. - André Scholich; Simon Syga; Hernán Morales-Navarrete; Fabian Segovia-Miranda; Hidenori Nonaka; Kirstin Meyer; Walter de Back; Lutz Brusch; Yannis Kalaidzidis; Marino Zerial; Frank Jülicher; Benjamin M. Friedrich (PLoS Comput. Biol., 2020)

Particle-Based Segmentation Of Extended Objects On Curved Biological Membranes. - Anastasia Solomatina; Yannis Kalaidzidis; Alice Cezanne; Karen Soans; Caren Norden; Marino Zerial; Ivo F. Sbalzarini (ISBI, 2021)

Correction: Quantification of nematic cell polarity in three-dimensional tissues. - André Scholich; Simon Syga; Hernán Morales-Navarrete; Fabian Segovia-Miranda; Hidenori Nonaka; Kirstin Meyer; Walter de Back; Lutz Brusch; Yannis Kalaidzidis; Marino Zerial; Frank Jülicher; Benjamin M. Friedrich (PLoS Comput. Biol., 2021)

Design centering enables robustness screening of pattern formation models. - Anastasia Solomatina; Alice Cezanne; Yannis Kalaidzidis; Marino Zerial; Ivo F. Sbalzarini (Bioinform., 2022)

DeepContrast: Deep Tissue Contrast Enhancement using Synthetic Data Degradations and OOD Model Predictions. - Nuno Pimpão Martins; Yannis Kalaidzidis; Marino Zerial; Florian Jug (ICCV (Workshops), 2023)