Improving fold recognition of protein threading by experimental distance constraints. - Mario Albrecht; Daniel Hanisch; Ralf Zimmer; Thomas Lengauer (Silico Biol., 2002)

Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family. - Mario Albrecht; Thomas Lengauer (Bioinform., 2003)

Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. - Mario Albrecht; Thomas Lengauer; Stefan Schreiber (Bioinform., 2003)

Decomposing protein networks into domain-domain interactions. - Mario Albrecht; Carola Huthmacher; Silvio C. E. Tosatto; Thomas Lengauer (ECCB/JBI, 2005)

Combining protein structure prediction with experiments and functional information. - Mario Albrecht (2006)

Functional evaluation of domain-domain interactions and human protein interaction networks. - Andreas Schlicker; Carola Huthmacher; Fidel Ramírez; Thomas Lengauer; Mario Albrecht (Bioinform., 2007)

08191 Working Group Summary - Visually Comparing a Set of Graphs. - Mario Albrecht; Alejandro Estrella-Balderrama; Markus Geyer; Carsten Gutwenger; Karsten Klein 001; Oliver Kohlbacher; Michael Schulz 001 (Graph Drawing with Applications to Bioinformatics and Social Sciences, 2008)

Applications of semantic similarity measures. - Andreas Schlicker; Fidel Ramírez; Jörg Rahnenführer; Carola Huthmacher; Alejandro Pironti; Francisco S. Domingues; Thomas Lengauer; Mario Albrecht (Ontologies and Text Mining for Life Sciences, 2008)

An integrative approach for predicting interactions of protein regions. - Sven-Eric Schelhorn; Thomas Lengauer; Mario Albrecht (ECCB, 2008)

Computing topological parameters of biological networks. - Yassen Assenov; Fidel Ramírez; Sven-Eric Schelhorn; Thomas Lengauer; Mario Albrecht (Bioinform., 2008)

Integrating expression data with domain interaction networks. - Dorothea Emig; Melissa S. Cline; Thomas Lengauer; Mario Albrecht (Bioinform., 2008)

Integrating biological data - the Distributed Annotation System. - Andrew M. Jenkinson; Mario Albrecht; Ewan Birney; Hagen Blankenburg; Thomas A. Down; Robert D. Finn; Henning Hermjakob; Tim J. P. Hubbard; Rafael C. Jiménez; Philip Jones; Andreas Kähäri; Eugene Kulesha; et al. (BMC Bioinform., 2008)

Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks. - Dorothea Emig; Melissa S. Cline; Karsten Klein 001; Anne Kunert; Petra Mutzel; Thomas Lengauer; Mario Albrecht (J. Integr. Bioinform., 2008)

FunSimMat: a comprehensive functional similarity database. - Andreas Schlicker; Mario Albrecht (Nucleic Acids Res., 2008)

On Open Problems in Biological Network Visualization. - Mario Albrecht; Andreas Kerren; Karsten Klein 001; Oliver Kohlbacher; Petra Mutzel; Wolfgang Paul 001; Falk Schreiber; Michael Wybrow (GD, 2009)

DASMI: exchanging, annotating and assessing molecular interaction data. - Hagen Blankenburg; Robert D. Finn; Andreas Prlic; Andrew M. Jenkinson; Fidel Ramírez; Dorothea Emig; Sven-Eric Schelhorn; Joachim Büch; Thomas Lengauer; Mario Albrecht (Bioinform., 2009)

DASMIweb: online integration, analysis and assessment of distributed protein interaction data. - Hagen Blankenburg; Fidel Ramírez; Joachim Büch; Mario Albrecht (Nucleic Acids Res., 2009)

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms. - Andreas Schlicker; Thomas Lengauer; Mario Albrecht (Bioinform., 2010)

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. - Dorothea Emig; Nathan Salomonis; Jan Baumbach; Thomas Lengauer; Bruce R. Conklin; Mario Albrecht (Nucleic Acids Res., 2010)

FunSimMat update: new features for exploring functional similarity. - Andreas Schlicker; Mario Albrecht (Nucleic Acids Res., 2010)

DIDO: a disease-determinants ontology from web sources. - Victoria Nebot Romero; Min Ye 001; Mario Albrecht; Jae-Hong Eom; Gerhard Weikum (WWW (Companion Volume), 2011)

Measuring and analyzing tissue specificity of human genes and protein complexes. - Dorothea Emig; Tim Kacprowski; Mario Albrecht (EURASIP J. Bioinform. Syst. Biol., 2011)

Novel search method for the discovery of functional relationships. - Fidel Ramírez; Glenn Lawyer; Mario Albrecht (Bioinform., 2012)

NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules. - Tim Kacprowski; Nadezhda T. Doncheva; Mario Albrecht (Bioinform., 2013)

setsApp: Set operations for Cytoscape Nodes and Edges. - John H. Morris; Allan Wu; Nadezhda T. Doncheva; Mario Albrecht; Thomas E. Ferrin (F1000Research, 2014)

CytoGEDEVO - global alignment of biological networks with Cytoscape. - Maximilian Malek; Rashid Ibragimov; Mario Albrecht; Jan Baumbach (Bioinform., 2016)