A Higher-Order Calculus for Categories. - Mario Cáccamo; Glynn Winskel (TPHOLs, 2001)

Limit Preservation from Naturality. - Mario Cáccamo; Glynn Winskel (CTCS, 2004)

Ensembl 2004. - Ewan Birney; T. Daniel Andrews; Paul Bevan 001; Mario Cáccamo; Graham Cameron; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; James A. Cuff; Val Curwen; Tim Cutts; et al. (Nucleic Acids Res., 2004)

ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale. - Zemin Ning; Mario Cáccamo; James C. Mullikin (CSB Workshops, 2005)

Ensembl 2005. - Tim J. P. Hubbard; D. Andrews; Mario Cáccamo; Graham Cameron; Yuan Chen 007; Michele E. Clamp; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; et al. (Nucleic Acids Res., 2005)

Ensembl 2006. - Ewan Birney; T. Daniel Andrews; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; Thomas A. Down; Richard Durbin; et al. (Nucleic Acids Res., 2006)

Ensembl 2007. - Tim J. P. Hubbard; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2007)

Ensembl 2008. - Paul Flicek; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2008)

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data. - Ricardo Ramirez-Gonzalez; Mario Cáccamo; Daniel MacLean (Bioinform., 2011)

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments. - Ricardo Ramirez-Gonzalez; Raoul Jean Pierre Bonnal; Mario Cáccamo; Daniel MacLean (Source Code Biol. Medicine, 2012)

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics. - Ricardo H. Ramirez-Gonzalez; Richard M. Leggett; Darren Waite; Anil S. Thanki; Nizar Drou; Mario Cáccamo; Robert P. Davey (F1000Research, 2013)

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries. - Richard M. Leggett; Bernardo J. Clavijo; Leah Clissold; Matthew D. Clark; Mario Cáccamo (Bioinform., 2014)

PolyMarker: A fast polyploid primer design pipeline. - Ricardo H. Ramirez-Gonzalez; Cristobal Uauy; Mario Cáccamo (Bioinform., 2015)

gEVAL - a web-based browser for evaluating genome assemblies. - William Chow; Kim Brügger; Mario Cáccamo; Ian Sealy; James W. Torrance; Kerstin Howe (Bioinform., 2016)

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles. - Richard M. Leggett; Darren Heavens; Mario Cáccamo; Matthew D. Clark; Robert P. Davey (Bioinform., 2016)

CerealsDB 3.0: expansion of resources and data integration. - Paul A. Wilkinson; Mark O. Winfield; Gary L. A. Barker; Simon Tyrrell; Xingdong Bian; Alexandra M. Allen; Amanda Burridge; Jane A. Coghill; Christy Waterfall; Mario Cáccamo; Robert P. Davey; Keith J. Edwards (BMC Bioinform., 2016)

Bioinformatics of DNA [Scanning the Issue]. - Lenwood S. Heath; Héctor Corrada Bravo; Mario Cáccamo; Michael Schatz (Proc. IEEE, 2017)

Data management challenges for artificial intelligence in plant and agricultural research. - Hugh F. Williamson; Julia Brettschneider; Mario Cáccamo; Robert P. Davey; Carole A. Goble; Paul J. Kersey; Sean T. May; Richard J. Morris; Richard Ostler; Tony P. Pridmore; Christopher J. Rawlings; David J. Studholme; et al. (F1000Research, 2021)

Capturing variation in metagenomic assembly graphs with MetaCortex. - Samuel Martin; Martin Ayling; Livia Patrono; Mario Cáccamo; Pablo Murcia; Richard M. Leggett (Bioinform., 2023)