Web-TCGA: an online platform for integrated analysis of molecular cancer data sets. - Mario Deng; Johannes Brägelmann; Joachim L. Schultze; Sven Perner (BMC Bioinform., 2016)

FirebrowseR: an R client to the Broad Institute's Firehose Pipeline. - Mario Deng; Johannes Brägelmann; Ivan Kryukov; Nuno Saraiva-Agostinho; Sven Perner (Database J. Biol. Databases Curation, 2017)

Predicting Rules for Cancer Subtype Classification using Grammar-Based Genetic Programming on various Genomic Data Types - Mario Deng (2018)