A new algorithm for predicting competing endogenous rnas. - Mario Flores; Yufei Huang 001 (GENSiPS, 2012)

NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs. - Mario Flores; Yufei Huang 001; Yidong Chen 002 (GENSiPS, 2013)

Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. - Mario Flores; Tzu-Hung Hsiao; Yu-Chiao Chiu; Eric Y. Chuang; Yufei Huang 001; Yidong Chen 002 (Adv. Bioinformatics, 2013)

BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database. - Chifeng Ma; Hung-I Harry Chen; Mario Flores; Yufei Huang 001; Yidong Chen 002 (BMC Syst. Biol., 2013)

MeT-DB: a database of transcriptome methylation in mammalian cells. - Hui Liu 024; Mario A. Flores; Jia Meng 001; Lin Zhang 015; Xinyu Zhao; Manjeet K. Rao; Yidong Chen 002; Yufei Huang 001 (Nucleic Acids Res., 2015)

A dynamic pricing algorithm for a network of virtual resources. - Bram Naudts; Mario Flores; Rashid Mijumbi; Sofie Verbrugge; Joan Serrat 001; Didier Colle (Int. J. Netw. Manag., 2017)

Enhancer reprogramming in mammalian genomes. - Mario A. Flores; Ivan Ovcharenko (BMC Bioinform., 2018)

Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. - Mario Flores; Zhentao Liu; Tinghe Zhang; Md Musaddaqui Hasib; Yu-Chiao Chiu; Zhenqing Ye; Karla Paniagua; Sumin Jo; Jianqiu Zhang 002; Shou-Jiang Gao; Yu-Fang Jin; Yidong Chen 002; et al. (Briefings Bioinform., 2022)