A Debugging Environment for Lazy Functional Languages. - Guy Lapalme; Mario Latendresse (LISP Symb. Comput., 1992)

Behavioral contracts and behavioral subtyping. - Robert Bruce Findler; Mario Latendresse; Matthias Felleisen (ESEC / SIGSOFT FSE, 2001)

Fast Symbolic Evaluation of C/C++ Preprocessing Using Conditional Value. - Mario Latendresse (CSMR, 2003)

RegReg: a Lightweight Generator of Robust Parsers for Irregular Languages. - Mario Latendresse (WCRE, 2003)

Rewrite Systems for Symbolic Evaluation of C-like Preprocessing. - Mario Latendresse (CSMR, 2004)

Masquerade Detection via Customized Grammars. - Mario Latendresse (DIMVA, 2005)

Generation of fast interpreters for Huffman compressed bytecode. - Mario Latendresse; Marc Feeley (Sci. Comput. Program., 2005)

Simple and efficient compilation of list comprehension in common Lisp. - Mario Latendresse (ILC, 2007)

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. - Ron Caspi; Hartmut Foerster; Carol A. Fulcher; Pallavi Kaipa; Markus Krummenacker; Mario Latendresse; Suzanne M. Paley; Seung Yon Rhee; Alexander Glennon Shearer; Christophe Tissier; Thomas C. Walk; Peifen Zhang; et al. (Nucleic Acids Res., 2008)

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. - Peter D. Karp; Suzanne M. Paley; Markus Krummenacker; Mario Latendresse; Joseph M. Dale; Thomas J. Lee; Pallavi Kaipa; Fred Gilham; Aaron Spaulding; Liviu Popescu; Tomer Altman; Ian T. Paulsen; et al. (Briefings Bioinform., 2010)

An advanced web query interface for biological databases. - Mario Latendresse; Peter D. Karp (Database J. Biol. Databases Curation, 2010)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. - Ron Caspi; Tomer Altman; Joseph M. Dale; Kate Dreher; Carol A. Fulcher; Fred Gilham; Pallavi Kaipa; Athikkattuvalasu S. Karthikeyan; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A. Mueller; et al. (Nucleic Acids Res., 2010)

Using cellular network diagrams to interpret large-scale datasets: past progress and future challenges. - Peter D. Karp; Mario Latendresse; Suzanne M. Paley (Human Vision and Electronic Imaging, 2011)

Web-Based Metabolic Network Visualization with a Zooming User Interface. - Mario Latendresse; Peter D. Karp (BMC Bioinform., 2011)

EcoCyc: a comprehensive database of Escherichia coli biology. - Ingrid M. Keseler; Julio Collado-Vides; Alberto Santos-Zavaleta; Martín Peralta-Gil; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martínez; Suzanne M. Paley; Markus Krummenacker; Tomer Altman; Pallavi Kaipa; Aaron Spaulding; et al. (Nucleic Acids Res., 2011)

Conservative Groupoids Recognize Only Regular Languages. - Danny Dubé; Mario Latendresse; Pascal Tesson (LATA, 2012)

Construction and completion of flux balance models from pathway databases. - Mario Latendresse; Markus Krummenacker; Miles Trupp; Peter D. Karp (Bioinform., 2012)

Regulatory network operations in the Pathway Tools software. - Suzanne M. Paley; Mario Latendresse; Peter D. Karp (BMC Bioinform., 2012)

Accurate Atom-Mapping Computation for Biochemical Reactions. - Mario Latendresse; Jeremiah P. Malerich; Mike Travers; Peter D. Karp (J. Chem. Inf. Model., 2012)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. - Ron Caspi; Tomer Altman; Kate Dreher; Carol A. Fulcher; Pallavi Subhraveti; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A. Mueller; Quang Ong; Suzanne M. Paley; et al. (Nucleic Acids Res., 2012)

EcoCyc: fusing model organism databases with systems biology. - Ingrid M. Keseler; Amanda Mackie; Martín Peralta-Gil; Alberto Santos-Zavaleta; Socorro Gama-Castro; César Bonavides-Martínez; Carol A. Fulcher; Araceli M. Huerta; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2013)

Optimal metabolic route search based on atom mappings. - Mario Latendresse; Markus Krummenacker; Peter D. Karp (Bioinform., 2014)

Efficiently Gap-Filling Reaction Networks. - Mario Latendresse (BMC Bioinform., 2014)

Conservative groupoids recognize only regular languages. - Martin Beaudry; Danny Dubé; Maxime Dubé; Mario Latendresse; Pascal Tesson (Inf. Comput., 2014)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. - Ron Caspi; Tomer Altman; Richard Billington; Kate Dreher; Hartmut Foerster; Carol A. Fulcher; Timothy A. Holland; Ingrid M. Keseler; Anamika Kothari; Aya Kubo; Markus Krummenacker; Mario Latendresse; et al. (Nucleic Acids Res., 2014)

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology. - Peter D. Karp; Mario Latendresse; Suzanne M. Paley; Markus Krummenacker; Quang Ong; Richard Billington; Anamika Kothari; Daniel S. Weaver; Thomas J. Lee; Pallavi Subhraveti; Aaron Spaulding; Carol A. Fulcher; et al. (Briefings Bioinform., 2016)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. - Ron Caspi; Richard Billington; Luciana Ferrer; Hartmut Foerster; Carol A. Fulcher; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A. Mueller; Quang Ong; Suzanne M. Paley; et al. (Nucleic Acids Res., 2016)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. - Ingrid M. Keseler; Amanda Mackie; Alberto Santos-Zavaleta; Richard Billington; César Bonavides-Martínez; Ron Caspi; Carol A. Fulcher; Socorro Gama-Castro; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2017)

Evaluation of reaction gap-filling accuracy by randomization. - Mario Latendresse; Peter D. Karp (BMC Bioinform., 2018)

How accurate is automated gap filling of metabolic models? - Peter D. Karp; Daniel S. Weaver; Mario Latendresse (BMC Syst. Biol., 2018)

The MetaCyc database of metabolic pathways and enzymes. - Ron Caspi; Richard Billington; Carol A. Fulcher; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Peter E. Midford; Quang Ong; Wai Kit Ong; Suzanne M. Paley; Pallavi Subhraveti; et al. (Nucleic Acids Res., 2018)

The BioCyc collection of microbial genomes and metabolic pathways. - Peter D. Karp; Richard Billington; Ron Caspi; Carol A. Fulcher; Mario Latendresse; Anamika Kothari; Ingrid M. Keseler; Markus Krummenacker; Peter E. Midford; Quang Ong; Wai Kit Ong; Suzanne M. Paley; et al. (Briefings Bioinform., 2019)

Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. - Peter D. Karp; Peter E. Midford; Richard Billington; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Wai Kit Ong; Pallavi Subhraveti; Ron Caspi; Carol A. Fulcher; Ingrid M. Keseler; Suzanne M. Paley (Briefings Bioinform., 2021)

SynRoute: A Retrosynthetic Planning Software. - Mario Latendresse; Jeremiah P. Malerich; James Herson; Markus Krummenacker; Judy Szeto; Vi-Anh Vu; Nathan Collins; Peter B. Madrid (J. Chem. Inf. Model., 2023)