In silico synchronization of cellular populations through expression data deconvolution. - Marisa C. Eisenberg; Joshua N. Ash; Dan Siegal-Gaskins (DAC, 2011)

Hierarchical Graph-Coupled HMMs for Heterogeneous Personalized Health Data. - Kai Fan 002; Marisa C. Eisenberg; Alison Walsh; Allison Aiello; Katherine A. Heller (KDD, 2015)

Parameter identifiability and identifiable combinations in generalized Hodgkin-Huxley models. - Olivia J. Walch; Marisa C. Eisenberg (Neurocomputing, 2016)

Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis. - Andrew F. Brouwer; Rafael Meza; Marisa C. Eisenberg (PLoS Comput. Biol., 2017)

Dose-response relationships for environmentally mediated infectious disease transmission models. - Andrew F. Brouwer; Mark H. Weir; Marisa C. Eisenberg; Rafael Meza; Joseph N. S. Eisenberg (PLoS Comput. Biol., 2017)

Online reactions to the 2017 'Unite the right' rally in Charlottesville: measuring polarization in Twitter networks using media followership. - Joseph H. Tien; Marisa C. Eisenberg; Sarah T. Cherng; Mason A. Porter (Appl. Netw. Sci., 2020)

Protective impacts of household-based tuberculosis contact tracing are robust across endemic incidence levels and community contact patterns. - Joshua Havumaki; Ted Cohen; Chengwei Zhai; Joel C. Miller; Seth D. Guikema; Marisa C. Eisenberg; Jon Zelner (PLoS Comput. Biol., 2021)

Leveraging infectious disease models to interpret randomized controlled trials: Controlling enteric pathogen transmission through water, sanitation, and hygiene interventions. - Andrew F. Brouwer; Marisa C. Eisenberg; Kevin M. Bakker; Savannah N. Boerger; Mondal H. Zahid; Matthew C. Freeman; Joseph N. S. Eisenberg (PLoS Comput. Biol., 2022)

Simulation as Supervision: Mechanistic Pretraining for Scientific Discovery. - Carson Dudley; Reiden Magdaleno; Christopher Harding; Marisa C. Eisenberg (CoRR, 2025)