A general modular framework for gene set enrichment analysis. - Marit Ackermann; Korbinian Strimmer (BMC Bioinform., 2009)

Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data. - Weronika Sikora-Wohlfeld; Marit Ackermann; Eleni G. Christodoulou; Singaravelu Kalaimathy; Andreas Beyer (PLoS Comput. Biol., 2013)