Application of machine learning approaches on quantitative structure activity relationships. - Mariusz Butkiewicz; Ralf Mueller; Danilo Selic; Eric Dawson; Jens Meiler (CIBCB, 2009)

Comparative analysis of machine learning techniques for the prediction of logP. - Edward W. Lowe; Mariusz Butkiewicz; Matthew Spellings; Albert Omlor; Jens Meiler (CIBCB, 2011)

Bcl∷ChemInfo - Qualitative analysis of machine learning models for activation of HSD involved in Alzheimer's Disease. - Mariusz Butkiewicz; Edward W. Lowe; Jens Meiler (CIBCB, 2012)

GPU-accelerated machine learning techniques enable QSAR modeling of large HTS data. - Edward W. Lowe; Mariusz Butkiewicz; Nils Woetzel; Jens Meiler (CIBCB, 2012)

Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System. - Mariusz Butkiewicz; Nicole A. Restrepo; Jonathan L. Haines; Dana C. Crawford (CRI, 2016)

Pathway analysis by randomization incorporating structure - PARIS: an update. - Mariusz Butkiewicz; Jessica Cooke Bailey; Alex T. Frase; Scott M. Dudek; Brian L. Yaspan; Marylyn D. Ritchie; Sarah A. Pendergrass; Jonathan L. Haines (Bioinform., 2016)

Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants. - Mariusz Butkiewicz; Jonathan L. Haines; William S. Bush (Bioinform., 2017)

Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. - Mariusz Butkiewicz; Elizabeth E. Blue; Yuk Yee Leung; Xueqiu Jian; Edoardo Marcora; Alan E. Renton; Amanda Kuzma; Li-San Wang; Daniel C. Koboldt; Jonathan L. Haines; William S. Bush (Bioinform., 2018)