Simultaneous Detection of Action Potential Current Waveforms and Single Ion Channel Openings in Rat Cerebellar Granule Cells. - Marja-Leena Linne; S. S. Oja; Tuula O. Jalonen (Int. J. Neural Syst., 1996)

Mathematical model of a small neuron. - Marja-Leena Linne; Tuula O. Jahnen (EUSIPCO, 2000)

Estimation of population effects in synchronized budding yeast experiments. - Antti Niemistö; Tommi Aho; Henna Thesleff; Mikko Tiainen; Kalle Marjanen; Marja-Leena Linne; Olli Yli-Harja (Image Processing: Algorithms and Systems, 2003)

Simulations of the cultured granule neuron excitability. - Marja-Leena Linne; Tuula O. Jalonen (Neurocomputing, 2003)

Estimation and inversion of the effects of cell population asynchrony in gene expression time-series. - Harri Lähdesmäki; Heikki Huttunen; Tommi Aho; Marja-Leena Linne; Jari Niemi; Juha Kesseli; Ronald K. Pearson; Olli Yli-Harja (Signal Process., 2003)

A model integrating the cerebellar granule neuron excitability and calcium signaling pathways. - Marja-Leena Linne; Tiina Manninen; Tuula O. Jalonen (Neurocomputing, 2004)

Simulation tools for biochemical networks: evaluation of performance and usability. - Antti Pettinen; Tommi Aho; Olli-Pekka Smolander; Tiina Manninen; Antti Saarinen; Kaisa-Leena Taattola; Olli Yli-Harja; Marja-Leena Linne (Bioinform., 2005)

Discrete stochastic simulation of cell signaling: comparison of computational tools. - Tiina Manninen; Eeva Makiraatikka; Antti Ylipää; Antti Pettinen; Kalle Leinonen; Marja-Leena Linne (EMBC, 2006)

Developing Itô stochastic differential equation models for neuronal signal transduction pathways. - Tiina Manninen; Marja-Leena Linne; Keijo Ruohonen (Comput. Biol. Chem., 2006)

Properties and roles of BKCa channels in cultured cerebellar granule neuron: Experimental and simulation studies. - Marja-Leena Linne; Tuula O. Jalonen (Neurocomputing, 2006)

A novel approach to model neuronal signal transduction using stochastic differential equations. - Tiina Manninen; Marja-Leena Linne; Keijo Ruohonen (Neurocomputing, 2006)

Comparison of automated parameter estimation methods for neuronal signaling networks. - Antti Pettinen; Olli Yli-Harja; Marja-Leena Linne (Neurocomputing, 2006)

Modeling single neuron behavior using stochastic differential equations. - Antti Saarinen; Marja-Leena Linne; Olli Yli-Harja (Neurocomputing, 2006)

Computational Methods for Estimation of Cell Cycle Phase Distributions of Yeast Cells. - Antti Niemistö; Matti Nykter; Tommi Aho; Henna Jalovaara; Kalle Marjanen; Miika Ahdesmäki; Pekka Ruusuvuori; Mikko Tiainen; Marja-Leena Linne; Olli Yli-Harja (EURASIP J. Bioinform. Syst. Biol., 2007)

Stochastic Differential Equation Model for Cerebellar Granule Cell Excitability. - Antti Saarinen; Marja-Leena Linne; Olli Yli-Harja (PLoS Comput. Biol., 2008)

Postsynaptic Signal Transduction Models for Long-Term Potentiation and Depression. - Tiina Manninen; Katri Hituri; Jeanette Hellgren Kotaleski; Kim T. Blackwell; Marja-Leena Linne (Frontiers Comput. Neurosci., 2010)

Computational study of noise in a large signal transduction network. - Jukka Intosalmi; Tiina Manninen; Keijo Ruohonen; Marja-Leena Linne (BMC Bioinform., 2011)

Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D. - Jugoslava Acimovic; Tuomo Mäki-Marttunen; Riikka Havela; Heidi Teppola; Marja-Leena Linne (EURASIP J. Bioinform. Syst. Biol., 2011)

Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models. - Tiina Manninen; Katri Hituri; Eeva Toivari; Marja-Leena Linne (EURASIP J. Bioinform. Syst. Biol., 2011)

Information Diversity in Structure and Dynamics of Simulated Neuronal Networks. - Tuomo Mäki-Marttunen; Jugoslava Acimovic; Matti Nykter; Juha Kesseli; Keijo Ruohonen; Olli Yli-Harja; Marja-Leena Linne (Frontiers Comput. Neurosci., 2011)

Modeling Neuron-Astrocyte Interactions: Towards Understanding Synaptic Plasticity and Learning in the Brain. - Riikka Havela; Tiina Manninen; Ausra Saudargiene; Marja-Leena Linne (ICIC (2), 2017)

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability. - Tiina Manninen; Riikka Havela; Marja-Leena Linne (Frontiers Neuroinformatics, 2017)

Computational Models for Calcium-Mediated Astrocyte Functions. - Tiina Manninen; Riikka Havela; Marja-Leena Linne (Frontiers Comput. Neurosci., 2018)

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures. - Tiina Manninen; Jugoslava Acimovic; Riikka Havela; Heidi Teppola; Marja-Leena Linne (Frontiers Neuroinformatics, 2018)

Projection-based order reduction of a nonlinear biophysical neuronal network model. - Mikko Lehtimäki; Lassi Paunonen; Marja-Leena Linne (CDC, 2019)

Accelerated Simulation of a Neuronal Population via Mathematical Model Order Reduction. - Mikko Lehtimäki; Ippa Seppälä; Lassi Paunonen; Marja-Leena Linne (AICAS, 2020)

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex. - Tiina Manninen; Ausra Saudargiene; Marja-Leena Linne (PLoS Comput. Biol., 2020)

Analysis of Network Models with Neuron-Astrocyte Interactions. - Tiina Manninen; Jugoslava Acimovic; Marja-Leena Linne (Neuroinformatics, 2023)

Accelerating Neural ODEs Using Model Order Reduction. - Mikko Lehtimäki; Lassi Paunonen; Marja-Leena Linne (IEEE Trans. Neural Networks Learn. Syst., 2024)