Long-range interactions and parallel scalability in molecular simulations. - Michael Patra; Marja T. Hyvönen; Emma Falck; Mohsen Sabouri-Ghomi; Ilpo Vattulainen; Mikko Karttunen (Comput. Phys. Commun., 2007)

Assessing the Nature of Lipid Raft Membranes. - Perttu S. Niemelä; Samuli Ollila; Marja T. Hyvönen; Mikko Karttunen; Ilpo Vattulainen (PLoS Comput. Biol., 2007)

Atomistic insight into chondroitin-6-sulfate glycosaminoglycan chain through quantum mechanics calculations and molecular dynamics simulation. - G. Cilpa; Marja T. Hyvönen; Artturi Koivuniemi; M.-L. Riekkola (J. Comput. Chem., 2010)

Role of Lipids in Spheroidal High Density Lipoproteins. - Timo Vuorela; Andrea Catte; Perttu S. Niemelä; Anette Hall; Marja T. Hyvönen; Siewert J. Marrink; Mikko Karttunen; Ilpo Vattulainen (PLoS Comput. Biol., 2010)

Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations. - Artturi Koivuniemi; Timo Vuorela; Petri T. Kovanen; Ilpo Vattulainen; Marja T. Hyvönen (PLoS Comput. Biol., 2012)