Construction of a computable cell proliferation network focused on non-diseased lung cells. - Jurjen Willem Westra; Walter K. Schlage; Brian P. Frushour; Stephan Gebel; Natalie L. Catlett; Wan-Jiang Han; Sean F. Eddy; Arnd Hengstermann; Andrea L. Matthews; Carole Mathis; Rosemarie B. Lichtner; Carine Poussin; et al. (BMC Syst. Biol., 2011)

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. - Adi L. Tarca; Mario Lauria; Michael Unger; Erhan Bilal; Stéphanie Boué; Kushal Kumar Dey; Julia Hoeng; Heinz Koeppl; Florian Martin 002; Pablo Meyer 001; Preetam Nandy; Raquel Norel; et al. (Bioinform., 2013)

Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models. - Florian Martin 002; Alain Sewer; Marja Talikka; Yang Xiang; Julia Hoeng; Manuel C. Peitsch (BMC Bioinform., 2014)

Challenges in finding a connection between IL education and research problem formulation. - Marja Talikka; Hanna Varri; Harri Eskelinen; Heli Rimppi (FIE, 2015)

Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems. - Stéphanie Boué; Marja Talikka; Jurjen Willem Westra; William Hayes; Anselmo Di Fabio; Jennifer Park; Walter K. Schlage; Alain Sewer; Brett Fields; Sam Ansari; Florian Martin 002; Emilija Veljkovic; et al. (Database J. Biol. Databases Curation, 2015)

Construction of biological networks from unstructured information based on a semi-automated curation workflow. - Justyna Szostak; Sam Ansari; Sumit Madan; Juliane Fluck; Marja Talikka; Anita Iskandar; Hector De Leon; Martin Hofmann-Apitius; Manuel C. Peitsch; Julia Hoeng (Database J. Biol. Databases Curation, 2015)

Systems Toxicology Approach to Unravel Early Indicators of Squamous Cell Carcinoma Rate in Rat Nasal Epithelium Induced by Formaldehyde Exposure. - Florian Martin 002; Marja Talikka; Julia Hoeng; Manuel C. Peitsch (PACBB, 2019)

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks. - Florian Martin 002; Sylvain Gubian; Marja Talikka; Julia Hoeng; Manuel C. Peitsch (BMC Bioinform., 2019)

Guided process to enhance undergraduate engineering students' thesis work. - Marja Talikka; Johanna Naukkarinen; Katriina Mielonen; Harri Eskelinen (FIE, 2022)