Simulation analysis of formycin 5'-monophosphate analog substrates in the ricin A-chain active site. - Mark A. Olson; John P. Scovill; Dallas C. Hack (J. Comput. Aided Mol. Des., 1995)

Market Design and Motivated Human Trading Behavior in Electricity Markets. - Mark A. Olson; Stephen J. Rassenti; Vernon L. Smith; Mary L. Rigdon; Michael J. Ziegler (HICSS, 1999)

An efficient hybrid explicit/implicit solvent method for biomolecular simulations†. - Michael S. Lee; Freddie R. Salsbury Jr.; Mark A. Olson (J. Comput. Chem., 2004)

Molecular Dynamics Simulations of Folding and Insertion of the Ebola Vrus Fusion Peptide into a Membrane Bilayer. - Mark A. Olson; In-Chul Yeh; Michael S. Lee (BIOCOMP, 2008)

Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions. - Mark A. Olson; Michael Feig; Charles L. Brooks III (J. Comput. Chem., 2008)

Conformational Sampling of Protein Loop Structures by Self-Guided Langevin Dynamics. - Michael S. Lee; Mark A. Olson (BIOCOMP, 2009)

Comparison between self-guided langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations. - Mark A. Olson; Sidhartha Chaudhury; Michael S. Lee (J. Comput. Chem., 2011)

Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models. - Mark A. Olson; Michael S. Lee (J. Comput. Chem., 2013)

Membrane insertion of fusion peptides from Ebola and Marburg viruses studied by replica-exchange molecular dynamics simulations. - Mark A. Olson; Michael S. Lee; In-Chul Yeh (J. Comput. Chem., 2017)

Parallel Tempering of Dark Matter from the Ebola Virus Proteome: Comparison of CHARMM36m and CHARMM22 Force Fields with Implicit Solvent. - Mark A. Olson (J. Chem. Inf. Model., 2018)