Parallel Computation for Medicine and Biology: Applications of Linda At Yale University. - Dean F. Sittig; Mark A. Shifman; Prakash M. Nadkarni; Perry L. Miller (Int. J. High Perform. Comput. Appl., 1992)

PFGE MAPPER: a tool to aid in the analysis of pulse field gel electrophoresis maps. - Mark A. Shifman (Comput. Appl. Biosci., 1993)

Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty. - L. W. Wright; J. B. Lichter; John Reinitz; Mark A. Shifman; Kenneth K. Kidd; Perry L. Miller (Comput. Appl. Biosci., 1994)

Research Paper: Portability Issues for a Structured Clinical Vocabulary: Mapping from Yale to the Columbia Medical Entities Dictionary. - Joseph L. Kannry; Lawrence Wright; Mark A. Shifman; Scot M. Silverstein; Perry L. Miller (J. Am. Medical Informatics Assoc., 1996)

Case Study: Exploring Issues of Quality of Service in a Next Generation Internet Testbed: A Case Study Using PathMaster. - Mark A. Shifman; Frederick G. Sayward; Mark E. Mattie; Perry L. Miller (J. Am. Medical Informatics Assoc., 2002)

The Integration of Similar Clinical Research Data Collection Instruments. - Dorothy B. Cohen; Sandra J. Frawley; Mark A. Shifman; Perry L. Miller; Cynthia Brandt (AMIA, 2003)

Case Report: Exploring the Portability of Informatics Capabilities from a Clinical Application to a Bioscience Application. - Mark A. Shifman; Ranjana Srivastava; Cynthia Brandt; Tong-Ruei Li; Kevin P. White; Perry L. Miller (J. Am. Medical Informatics Assoc., 2004)

YPED: A Proteomics Database for Protein Expression Analysis. - Mark A. Shifman; Kexin Sun; Christopher M. Colangelo; Kei-Hoi Cheung; Perry L. Miller; Kenneth R. Williams (AMIA, 2005)

YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research. - Christopher M. Colangelo; Mark A. Shifman; Kei-Hoi Cheung; Kathryn L. Stone; Nicholas Carriero; Erol E. Gulcicek; TuKiet T. Lam; Terence Wu; Robert D. Bjornson; Can Bruce; Angus C. Nairn; Jesse Rinehart; et al. (Genom. Proteom. Bioinform., 2015)

A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling. - Roxanne Wadia; Mark A. Shifman; Forrest W. Levin; Luis N. Marenco; Cynthia Brandt; Kei-Hoi Cheung; Tamar H. Taddei; Michael Krauthammer (CRI, 2017)