A Protocol for Exchanging Scientific Citations. - Brian Matthews; Alastair Duncan; Catherine Mary Jones; Cameron Neylon; Mark Borkum; Simon J. Coles; Philip Hunter (eScience, 2009)

A Semantic eScience Platform for Chemistry. - Mark Borkum; Carl Lagoze; Jeremy G. Frey; Simon J. Coles (eScience, 2010)

myExperiment: a repository and social network for the sharing of bioinformatics workflows. - Carole A. Goble; Jiten Bhagat; Sergejs Aleksejevs; Don Cruickshank; Danius T. Michaelides; David R. Newman; Mark Borkum; Sean Bechhofer; Marco Roos; Peter Li; David De Roure (Nucleic Acids Res., 2010)

Towards a computable scientific method : using knowledge representation techniques and technologies to support research. - Mark I. Borkum (2013)

Usage and applications of Semantic Web techniques and technologies to support chemistry research. - Mark I. Borkum; Jeremy G. Frey (J. Cheminformatics, 2014)

Modeling framework for isotopic labeling of heteronuclear moieties. - Mark I. Borkum; Patrick Reardon; Ronald C. Taylor; Nancy G. Isern (J. Cheminformatics, 2017)

An automated framework for NMR chemical shift calculations of small organic molecules. - Yasemin Yesiltepe; Jamie R. Nuñez; Sean M. Colby; Dennis G. Thomas; Mark I. Borkum; Patrick Reardon; Nancy M. Washton; Thomas O. Metz; Justin G. Teeguarden; Niranjan Govind; Ryan S. Renslow (J. Cheminformatics, 2018)

Leveraging Ontologies within the National Microbiome Data Collaborative. - William D. Duncan; Faiza Ahmed; Fnu Anubhav; Jeffrey Baumes; Jonathan Beezley; Mark Borkum; Lisa M. Bramer; Shane Canon; Patrick S. G. Chain; Danielle Christianson; Yuri Corilo; Karen Davenport; et al. (ICBO, 2021)

Distributed Ledger Technology for Fault Tolerant Distribution Grid Operations. - Fernando Bereta dos Reis; Mark Borkum; Monish Mukherjee; David Jonathan Sebastian Cardenas (IEEE Access, 2023)