Towards Argument-Driven Validation of an in silico Model of Immune Tissue Organogenesis. - Kieran Alden; Paul S. Andrews; Jon Timmis; Henrique Veiga-Fernandes; Mark C. Coles (ICARIS, 2011)

Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems. - Kieran Alden; Mark Read 001; Jonathan Timmis; Paul S. Andrews; Henrique Veiga-Fernandes; Mark C. Coles (PLoS Comput. Biol., 2013)

Easing Parameter Sensitivity Analysis of Netlogo Simulations Using SPARTAN. - Kieran Alden; Jon Timmis; Mark C. Coles (ALIFE, 2014)

Novel Approaches to the Visualization and Quantification of Biological Simulations by Emulating Experimental Techniques. - James A. Butler; Kieran Alden; Henrique Veiga-Fernandes; Jon Timmis; Mark C. Coles (ALIFE, 2014)

Applying spartan to Understand Parameter Uncertainty in Simulations. - Kieran Alden; Mark Read 001; Paul S. Andrews; Jon Timmis; Mark C. Coles (R J., 2014)

Utilising a simulation platform to understand the effect of domain model assumptions. - Kieran Alden; Paul S. Andrews; Henrique Veiga-Fernandes; Jon Timmis; Mark C. Coles (Nat. Comput., 2015)

ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour. - Stephanie Evans; Kieran Alden; Lourdes Cucurull-Sanchez; Christopher Larminie; Mark C. Coles; Marika C. Kullberg; Jon Timmis (PLoS Comput. Biol., 2017)

Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models. - Kieran Alden; Jon Timmis; Paul S. Andrews; Henrique Veiga-Fernandes; Mark C. Coles (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Using Emulation to Engineer and Understand Simulations of Biological Systems. - Kieran Alden; Jason Cosgrove; Mark C. Coles; Jon Timmis (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

A method for the inference of cytokine interaction networks. - Joanneke E. Jansen; Dominik Aschenbrenner; Holm H. Uhlig; Mark C. Coles; Eamonn A. Gaffney (PLoS Comput. Biol., 2022)