SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. - Francesc Coll; Kim Mallard; Mark D. Preston; Stephen D. Bentley; Julian Parkhill; Ruth McNerney; Nigel J. Martin 001; Taane G. Clark (Bioinform., 2012)

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data. - Mark D. Preston; Magnus Manske; Neil R. Horner; Samuel A. Assefa; Susana G. Campino; Sarah Auburn; Issaka Zongo; Jean-Bosco Ouedraogo; Francois Nosten; Timothy J. C. Anderson; Taane G. Clark (Bioinform., 2012)

estMOI: estimating multiplicity of infection using parasite deep sequencing data. - Samuel A. Assefa; Mark D. Preston; Susana G. Campino; Harold Ocholla; Colin J. Sutherland; Taane G. Clark (Bioinform., 2014)

SVAMP: sequence variation analysis, maps and phylogeny. - Raeece Naeem; Lailatul Hidayah; Mark D. Preston; Taane G. Clark; Arnab Pain (Bioinform., 2014)