Looking for Shortcuts: Infeasible Search Analysis for Oversubscribed Scheduling Problems. - Mark F. Rogers; Adele E. Howe; L. Darrell Whitley (ICAPS, 2006)

The use of gene ontology evidence codes in preventing classifier assessment bias. - Mark F. Rogers; Asa Ben-Hur (Bioinform., 2009)

SpliceGrapherXT: From Splice Graphs to Transcripts Using RNA-Seq. - Mark F. Rogers; Christina Boucher 001; Asa Ben-Hur (BCB, 2013)

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. - Milana Frenkel-Morgenstern; Alessandro Gorohovski; Vincent Lacroix; Mark F. Rogers; Kristina Ibáñez; Cesar Boullosa; Eduardo Andrés León; Asa Ben-Hur; Alfonso Valencia (Nucleic Acids Res., 2013)

Sequential data selection for predicting the pathogenic effects of sequence variation. - Mark F. Rogers; Colin Campbell; Hashem A. Shihab; Tom R. Gaunt; Matthew E. Mort; David N. Cooper (BIBM, 2015)

An integrative approach to predicting the functional effects of non-coding and coding sequence variation. - Hashem A. Shihab; Mark F. Rogers; Julian Gough; Matthew E. Mort; David N. Cooper; Ian N. M. Day; Tom R. Gaunt; Colin Campbell (Bioinform., 2015)

HIPred: an integrative approach to predicting haploinsufficient genes. - Hashem A. Shihab; Mark F. Rogers; Colin Campbell; Tom R. Gaunt (Bioinform., 2017)

An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome. - Michael Ferlaino; Mark F. Rogers; Hashem A. Shihab; Matthew E. Mort; David N. Cooper; Tom R. Gaunt; Colin Campbell (BMC Bioinform., 2017)

GTB - an online genome tolerance browser. - Hashem A. Shihab; Mark F. Rogers; Michael Ferlaino; Colin Campbell; Tom R. Gaunt (BMC Bioinform., 2017)

FATHMM-XF: accurate prediction of pathogenic point mutations via extended features. - Mark F. Rogers; Hashem A. Shihab; Matthew E. Mort; David N. Cooper; Tom R. Gaunt; Colin Campbell (Bioinform., 2018)

CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome. - Mark F. Rogers; Tom R. Gaunt; Colin Campbell (Bioinform., 2020)

Prediction of driver variants in the cancer genome via machine learning methodologies. - Mark F. Rogers; Tom R. Gaunt; Colin Campbell (Briefings Bioinform., 2021)