The Design of COMPASS: An Execution Driven Simulator for Commercial Applications Running on Shared Memory Multiprocessors. - Ashwini K. Nanda; Yiming Hu; Moriyoshi Ohara; Caroline Benveniste; Mark Giampapa; Maged M. Michael (IPPS/SPDP, 1998)

Demonstrating the scalability of a molecular dynamics application on a Petaflop computer. - George S. Almási; Calin Cascaval; José G. Castaños; Monty Denneau; Wilm E. Donath; Maria Eleftheriou; Mark Giampapa; C. T. Howard Ho; Derek Lieber; José E. Moreira; Dennis M. Newns; Marc Snir; et al. (ICS, 2001)

Experience with building a commodity Intel-based ccNUMA system. - Bishop Brock; Gary D. Carpenter; Eli Chiprout; Mark E. Dean; Philippe L. De Backer; E. N. Elnozahy; Hubertus Franke; Mark Giampapa; David Glasco; James L. Peterson; Ramakrishnan Rajamony; Rajan Ravindran; et al. (IBM J. Res. Dev., 2001)

Blue Gene: A vision for protein science using a petaflop supercomputer. - Frances E. Allen; George S. Almási; Wanda Andreoni; Daniel K. Beece; Bruce J. Berne; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Paul Coteus; Paul Crumley; Alessandro Curioni; et al. (IBM Syst. J., 2001)

Blue Gene/L, a System-On-A-Chip. - George S. Almási; Daniel K. Beece; Ralph Bellofatto; Gyan Bhanot; Randy Bickford; Matthias A. Blumrich; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Luis Ceze; Paul Coteus; et al. (CLUSTER, 2002)

An overview of the BlueGene/L Supercomputer. - Narasimha R. Adiga; George Almási 001; George S. Almási; Yariv Aridor; Rajkishore Barik; Daniel K. Beece; Ralph Bellofatto; Gyan Bhanot; Randy Bickford; Matthias A. Blumrich; Arthur A. Bright; José R. Brunheroto; et al. (SC, 2002)

Demonstrating the Scalability of a Molecular Dynamics Application on a Petaflops Computer. - George S. Almási; Calin Cascaval; José G. Castaños; Monty Denneau; Wilm E. Donath; Maria Eleftheriou; Mark Giampapa; C. T. Howard Ho; Derek Lieber; José E. Moreira; Dennis M. Newns; Marc Snir; et al. (Int. J. Parallel Program., 2002)

Power and performance optimization at the system level. - Valentina Salapura; Randy Bickford; Matthias A. Blumrich; Arthur A. Bright; Dong Chen 005; Paul Coteus; Alan Gara; Mark Giampapa; Michael Gschwind; Manish Gupta 002; Shawn Hall; Ruud A. Haring; et al. (Conf. Computing Frontiers, 2005)

Blue matter on blue gene/L: massively parallel computation for biomolecular simulation. - Robert S. Germain; Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; Michael Pitman; Frank Suits; Mark Giampapa; T. J. Christopher Ward (CODES+ISSS, 2005)

Blue Gene/L torus interconnection network. - Narasimha R. Adiga; Matthias A. Blumrich; Dong Chen 005; Paul Coteus; Alan Gara; Mark Giampapa; Philip Heidelberger; Sarabjeet Singh; Burkhard D. Steinmacher-Burow; Todd Takken; Mickey Tsao; Pavlos Vranas (IBM J. Res. Dev., 2005)

Overview of the Blue Gene/L system architecture. - Alan Gara; Matthias A. Blumrich; Dong Chen 005; George L.-T. Chiu; Paul Coteus; Mark Giampapa; Ruud A. Haring; Philip Heidelberger; Dirk Hoenicke; Gerard V. Kopcsay; Thomas A. Liebsch; Martin Ohmacht; et al. (IBM J. Res. Dev., 2005)

Blue Gene/L advanced diagnostics environment. - Mark Giampapa; Ralph Bellofatto; Matthias A. Blumrich; Dong Chen 005; Marc Boris Dombrowa; Alan Gara; Ruud A. Haring; Philip Heidelberger; Dirk Hoenicke; Gerard V. Kopcsay; Ben J. Nathanson; Burkhard D. Steinmacher-Burow; et al. (IBM J. Res. Dev., 2005)

Blue Gene/L compute chip: Memory and Ethernet subsystem. - Martin Ohmacht; Reinaldo A. Bergamaschi; Subhrajit Bhattacharya; Alan Gara; Mark Giampapa; Balaji Gopalsamy; Ruud A. Haring; Dirk Hoenicke; David J. Krolak; James A. Marcella; Ben J. Nathanson; Valentina Salapura; et al. (IBM J. Res. Dev., 2005)

Verification strategy for the Blue Gene/L chip. - Michael E. Wazlowski; Narasimha R. Adiga; Daniel K. Beece; Ralph Bellofatto; Matthias A. Blumrich; Dong Chen 005; Marc Boris Dombrowa; Alan Gara; Mark Giampapa; Ruud A. Haring; Philip Heidelberger; Dirk Hoenicke; et al. (IBM J. Res. Dev., 2005)

Progress in Scaling Biomolecular Simulations to Petaflop Scale Platforms. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Robert S. Germain (Euro-Par Workshops, 2006)

Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Yuriy Zhestkov; Michael Pitman; Frank Suits; Alan Grossfield; Jed W. Pitera; William C. Swope; Ruhong Zhou; et al. (International Conference on Computational Science (2), 2006)

Molecular dynamics - Blue matter: approaching the limits of concurrency for classical molecular dynamics. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Robert S. Germain (SC, 2006)

Blue Gene system software - Designing a highly-scalable operating system: the Blue Gene/L story. - José E. Moreira; Michael Brutman; José G. Castaños; Thomas Engelsiepen; Mark Giampapa; Tom Gooding; Roger L. Haskin; Todd Inglett; Derek Lieber; Patrick McCarthy; Michael B. Mundy; Jeff Parker; et al. (SC, 2006)

The Blue Gene/L Supercomputer: A Hardware and Software Story. - José E. Moreira; Valentina Salapura; George Almási 001; Charles Archer; Ralph Bellofatto; Peter Bergner; Randy Bickford; Matthias A. Blumrich; José R. Brunheroto; Arthur A. Bright; Michael Brutman; José G. Castaños; et al. (Int. J. Parallel Program., 2007)

The deep computing messaging framework: generalized scalable message passing on the blue gene/P supercomputer. - Sameer Kumar 001; Gábor Dózsa; Gheorghe Almási 001; Philip Heidelberger; Dong Chen 005; Mark Giampapa; Michael Blocksome; Ahmad Faraj; Jeff Parker; Joe Ratterman; Brian E. Smith; Charles Archer (ICS, 2008)

Blue Matter: Scaling of N-body simulations to one atom per node. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2008)

Massively parallel quantum chromodynamics. - Pavlos Vranas; Matthias A. Blumrich; Dong Chen 005; Alan Gara; Mark Giampapa; Philip Heidelberger; Valentina Salapura; James C. Sexton; Ron Soltz; Gyan Bhanot (IBM J. Res. Dev., 2008)

Experiences with a Lightweight Supercomputer Kernel: Lessons Learned from Blue Gene's CNK. - Mark Giampapa; Thomas Gooding; Todd Inglett; Robert W. Wisniewski (SC, 2010)

Blue Gene Line of LWKs. - Thomas Gooding; Bryan S. Rosenburg; Mark Giampapa; Todd Inglett; Robert W. Wisniewski (Operating Systems for Supercomputers and High Performance Computing, 2019)