A Novel Network Representation of SARS-CoV-2 Sequencing Data. - Sergey Knyazev; Daniel Novikov; Mark Grinshpon; Harman Singh; Ram Ayyala; Varuni Sarwal; Roya Hosseini; Pelin Icer Baykal; Pavel Skums; Ellsworth Campbell; Serghei Mangul; Alex Zelikovsky (ISBRA, 2021)

Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations. - Daniel Novikov; Sergey Knyazev; Mark Grinshpon; Pelin B. Icer; Pavel Skums; Alex Zelikovsky (J. Comput. Biol., 2021)

Entropy Based Clustering of Viral Sequences. - Akshay Juyal; Roya Hosseini; Daniel Novikov; Mark Grinshpon; Alex Zelikovsky (ISBRA, 2022)

Reconstruction of Viral Variants via Monte Carlo Clustering. - Akshay Juyal; Roya Hosseini; Daniel Novikov; Mark Grinshpon; Alex Zelikovsky (J. Comput. Biol., 2023)