Angiogenic Activity of Breast Cancer Patients' Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches. - Nicolas Guex; Isaac Crespo; Sylvian Bron; Assia Ifticene-Treboux; Eveline Faes-van't Hull; Solange Kharoubi; Robin Liechti; Patricia Werffeli; Mark Ibberson; Francois Majo; Michäel Nicolas; Julien Laurent; et al. (PLoS Comput. Biol., 2015)

Inferring gene expression networks with hubs using a degree weighted Lasso approach. - Nurgazy Sulaimanov; Sunil Kumar; Frédéric Burdet; Mark Ibberson; Marco Pagni; Heinz Koeppl (Bioinform., 2019)

MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models. - Sébastien Moretti; T. Van Du Tran; Florence Mehl; Mark Ibberson; Marco Pagni (Nucleic Acids Res., 2021)

BALDR: A Web-based platform for informed comparison and prioritization of biomarker candidates for type 2 diabetes mellitus. - Agnete T. Lundgaard; Frédéric Burdet; Troels Siggaard; David Westergaard; Danai Vagiaki; Lisa Cantwell; Timo Röder; Dorte Vistisen; Thomas Sparsø; Giuseppe N. Giordano; Mark Ibberson; Karina Banasik; et al. (PLoS Comput. Biol., 2023)

CHIST-ERA Triple: improving data interoperability and federation across RDF knowledge graphs and Solid Pods. - Jerven T. Bolleman; Elias Crum; Iulian Dragan; Jakub Galgonek; Mark Ibberson; Tarcisio Mendes de Farias; Marek Moos; Marco Pagni; Ruben Taelman; Jirí Vondrásek; Ana Claudia Sima (SWAT4HCLS, 2024)