PINA v2.0: mining interactome modules. - Mark J. Cowley; Mark Pinese; Karin S. Kassahn; Nic Waddell; John V. Pearson; Sean M. Grimmond; Andrew V. Biankin; Sampsa Hautaniemi; Jianmin Wu (Nucleic Acids Res., 2012)

Seave: a comprehensive web platform for storing and interrogating human genomic variation. - Velimir Gayevskiy; Tony Roscioli; Marcel E. Dinger; Mark J. Cowley (Bioinform., 2019)

consHLA: a next generation sequencing consensus-based HLA typing workflow. - Rachel Bowen-James; Weilin Wu; Marie Wong-Erasmus; Julian M. W. Quinn; Chelsea Mayoh; Mark J. Cowley (BMC Bioinform., 2025)