Enhanced recognition of protein transmembrane domains with prediction-based structural profiles. - Baoqiang Cao; Aleksey A. Porollo; Rafal Adamczak; Mark Jarrell; Jaroslaw Meller (Bioinform., 2006)

Parallel tempering simulation of the three-dimensional Edwards-Anderson model with compact asynchronous multispin coding on GPU. - Ye Fang; Sheng Feng; Ka-Ming Tam; Zhifeng Yun; Juana Moreno; Jagannathan Ramanujam; Mark Jarrell (Comput. Phys. Commun., 2014)

GeauxDock: A novel approach for mixed-resolution ligand docking using a descriptor-based force field. - Yun Ding; Ye Fang; Wei Pan Feinstein; Jagannathan Ramanujam; David M. Koppelman; Juana Moreno; Michal Brylinski; Mark Jarrell (J. Comput. Chem., 2015)

Assessing the similarity of ligand binding conformations with the Contact Mode Score. - Yun Ding; Ye Fang; Juana Moreno; J. Ramanujam; Mark Jarrell; Michal Brylinski (Comput. Biol. Chem., 2016)