Feature Saliency from Noise Variations in Invariants. - Mark Jenkinson; Michael Brady 001 (ACCV (2), 1998)

Accurate Robust Symmetry Estimation. - Stephen M. Smith 001; Mark Jenkinson (MICCAI, 1999)

A global optimisation method for robust affine registration of brain images. - Mark Jenkinson; Stephen M. Smith 001 (Medical Image Anal., 2001)

A saliency-based hierarchy for local symmetries. - Mark Jenkinson; Michael Brady 001 (Image Vis. Comput., 2002)

Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images. - Mark Jenkinson; Peter R. Bannister; Michael Brady 001; Stephen M. Smith 001 (NeuroImage, 2002)

Accurate, Robust, and Automated Longitudinal and Cross-Sectional Brain Change Analysis. - Stephen M. Smith 001; Yongyue Zhang; Mark Jenkinson; Jacqueline Chen; Paul M. Matthews; Antonio Federico; Nicola De Stefano (NeuroImage, 2002)

Fast, Fully Automated Global and Local Magnetic Field Optimization for fMRI of the Human Brain. - James L. Wilson; Mark Jenkinson; Ivan E. Tavares de Araújo; Morten L. Kringelbach; Edmund T. Rolls; Peter Jezzard (NeuroImage, 2002)

A Gradient-Informed Robust Motion Correction Method for FMRI. - Luis Freire; Mark Jenkinson (WBIR, 2003)

General multilevel linear modeling for group analysis in FMRI. - Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001 (NeuroImage, 2003)

Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex. - James L. Wilson; Mark Jenkinson; Peter Jezzard (NeuroImage, 2003)

Non-Rigid Motion Estimation and Spatio-Temporal Realignment in FMRI. - Peter R. Bannister; J. Michael Brady; Mark Jenkinson (CVPR Workshops, 2004)

TIGER - A New Model for Spatio-temporal Realignment of FMRI Data. - Peter R. Bannister; Michael Brady 001; Mark Jenkinson (ECCV Workshops CVAMIA and MMBIA, 2004)

Reducing Activation-Related Bias in FMRI Registration. - Luis Freire; Jeff Orchard; Mark Jenkinson; Jean-François Mangin (MIAR, 2004)

A Framework for Detailed Objective Comparison of Non-rigid Registration Algorithms in Neuroimaging. - William R. Crum; Daniel Rueckert; Mark Jenkinson; David N. Kennedy; Stephen M. Smith 001 (MICCAI (1), 2004)

Multilevel linear modelling for FMRI group analysis using Bayesian inference. - Mark W. Woolrich; Timothy Edward John Behrens; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001 (NeuroImage, 2004)

Fully Bayesian spatio-temporal modeling of FMRI data. - Mark William Woolrich; Mark Jenkinson; J. Michael Brady; Stephen M. Smith 001 (IEEE Trans. Medical Imaging, 2004)

Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation. - William R. Crum; Oscar Camara 001; Daniel Rueckert; Kanwal K. Bhatia; Mark Jenkinson; Derek L. G. Hill (MICCAI, 2005)

Comparing the Similarity of Statistical Shape Models Using the Bhattacharya Metric. - Kolawole O. Babalola; Timothy F. Cootes; Brian Patenaude; Anil Rao; Mark Jenkinson (MICCAI (1), 2006)

A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures. - Brian Patenaude; Stephen M. Smith 001; Mark Jenkinson (WBIR, 2006)

A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex. - T. E. J. Behrens; Mark Jenkinson; Matthew D. Robson; Stephen M. Smith 001; Heidi Johansen-Berg (NeuroImage, 2006)

Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data. - Stephen M. Smith 001; Mark Jenkinson; Heidi Johansen-Berg; Daniel Rueckert; Thomas E. Nichols; Clare E. Mackay; Kate E. Watkins; Olga Ciccarelli; M. Zaheer Cader; Paul M. Matthews; Timothy Edward John Behrens (NeuroImage, 2006)

A Marginalized MAP Approach and EM Optimization for Pair-Wise Registration. - Lilla Zöllei; Mark Jenkinson; Samson J. Timoner; William M. Wells III (IPMI, 2007)

Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images. - Peter R. Bannister; J. Michael Brady; Mark Jenkinson (Image Vis. Comput., 2007)

Meaningful design and contrast estimability in FMRI. - Stephen M. Smith 001; Mark Jenkinson; Christian F. Beckmann; Karla L. Miller; Mark W. Woolrich (NeuroImage, 2007)

Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX. - Stephen M. Smith 001; Anil Rao; Nicola De Stefano; Mark Jenkinson; Jonathan M. Schott; Paul M. Matthews; Nick C. Fox (NeuroImage, 2007)

Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI. - Kolawole O. Babalola; Brian Patenaude; Paul Aljabar; Julia A. Schnabel; David N. Kennedy; William R. Crum; Stephen M. Smith 001; Timothy F. Cootes; Mark Jenkinson; Daniel Rueckert (MICCAI (1), 2008)

Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging. - Clare B. Poynton; Mark Jenkinson; Stephen Whalen; Alexandra J. Golby; William M. Wells III (MICCAI (2), 2008)

Physiological noise modelling for spinal functional magnetic resonance imaging studies. - Jonathan C. W. Brooks; Christian F. Beckmann; Karla L. Miller; Richard G. Wise; Carlo A. Porro; Irene Tracey; Mark Jenkinson (NeuroImage, 2008)

Methods for Tractography-Driven Surface Registration of Brain Structures. - Aleksandar Petrovic; Stephen M. Smith 001; Ricarda A. Menke; Mark Jenkinson (MICCAI (1), 2009)

Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data. - Clare B. Poynton; Mark Jenkinson; William M. Wells III (MICCAI (1), 2009)

An evaluation of four automatic methods of segmenting the subcortical structures in the brain. - Kolawole Oluwole Babalola; Brian Patenaude; Paul Aljabar; Julia A. Schnabel; David N. Kennedy; William R. Crum; Stephen M. Smith 001; Timothy F. Cootes; Mark Jenkinson; Daniel Rueckert (NeuroImage, 2009)

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. - Arno Klein; Jesper L. R. Andersson; Babak A. Ardekani; John Ashburner; Brian B. Avants; Ming-Chang Chiang; Gary E. Christensen; D. Louis Collins; James C. Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; et al. (NeuroImage, 2009)

Bayesian analysis of neuroimaging data in FSL. - Mark William Woolrich; Saâd Jbabdi; Brian Patenaude; Michael A. Chappell; Salima Makni; Timothy Behrens; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001 (NeuroImage, 2009)

Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects. - Courtney A. Bishop; Mark Jenkinson; Jérôme Declerck; Dorit Merhof (VCBM, 2010)

Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447]. - Kolawole Oluwole Babalola; Brian Patenaude; Paul Aljabar; Julia A. Schnabel; David N. Kennedy; William R. Crum; Stephen M. Smith 001; Timothy F. Cootes; Mark Jenkinson; Daniel Rueckert (NeuroImage, 2010)

A combined diffusion tensor imaging (DTI) and [11C]-(+)-PHNO positron emission tomography (PET) study to quantify dopamine D3/D2 receptors in pallidum. - Andri C. Tziortzi; Gwenaëlle Douaud; Paul Shotbolt; Courtney A. Bishop; Graham E. Searle; Marc Laruelle; Eugenii A. Rabiner; Mark Jenkinson; Roger N. Gunn (NeuroImage, 2010)

Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8]. - Mojtaba Zarei; Brian Patenaude; Jessica Damoiseaux; Ciro Morgese; Steve M. Smith 001; Paul M. Matthews; Frederik Barkhof; Serge A. R. B. Rombouts; Ernesto Sanz-Arigita; Mark Jenkinson (NeuroImage, 2010)

Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease. - Mojtaba Zarei; Brian Patenaude; Jessica Damoiseaux; Ciro Morgese; Steve M. Smith 001; Paul M. Matthews; Frederik Barkhof; Serge A. R. B. Rombouts; Ernesto Sanz-Arigita; Mark Jenkinson (NeuroImage, 2010)

Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer. - Manav Bhushan; Julia A. Schnabel; Laurent Risser; Mattias P. Heinrich; J. Michael Brady; Mark Jenkinson (MICCAI (1), 2011)

Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration. - Mattias P. Heinrich; Mark Jenkinson; Manav Bhushan; Tahreema N. Matin; Fergus Gleeson; J. Michael Brady; Julia A. Schnabel (MICCAI (2), 2011)

Non-rigid image registration through efficient discrete optimization. - Mattias P. Heinrich; Mark Jenkinson; J. Michael Brady; Julia A. Schnabel (MIUA, 2011)

Informatics and Data Mining Tools and Strategies for the Human Connectome Project. - Daniel S. Marcus; John W. Harwell; Timothy R. Olsen; Michael R. Hodge; Matthew F. Glasser; Fred W. Prior; Mark Jenkinson; Timothy O. Laumann; Sandra W. Curtiss; David C. Van Essen (Frontiers Neuroinformatics, 2011)

Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. - Courtney A. Bishop; Mark Jenkinson; Jesper L. R. Andersson; Jérôme Declerck; Dorit Merhof (NeuroImage, 2011)

Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. - Karla L. Miller; Charlotte J. Stagg; Gwenaëlle Douaud; Saâd Jbabdi; Stephen M. Smith 001; Timothy Edward John Behrens; Mark Jenkinson; Steven A. Chance; Margaret M. Esiri; Natalie L. Voets; Ned Jenkinson; Tipu Z. Aziz; et al. (NeuroImage, 2011)

A Bayesian model of shape and appearance for subcortical brain segmentation. - Brian Patenaude; Stephen M. Smith 001; David N. Kennedy; Mark Jenkinson (NeuroImage, 2011)

Imaging dopamine receptors in humans with [11C]-(+)-PHNO: Dissection of D3 signal and anatomy. - Andri C. Tziortzi; Graham E. Searle; Sofia Tzimopoulou; Cristian A. Salinas; John D. Beaver; Mark Jenkinson; Marc Laruelle; Eugenii A. Rabiner; Roger N. Gunn (NeuroImage, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding 003; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

Textural mutual information based on cluster trees for multimodal deformable registration. - Mattias P. Heinrich; Mark Jenkinson; Michael Brady 001; Julia A. Schnabel (ISBI, 2012)

Globally Optimal Deformable Registration on a Minimum Spanning Tree Using Dense Displacement Sampling. - Mattias P. Heinrich; Mark Jenkinson; Michael Brady 001; Julia A. Schnabel (MICCAI (3), 2012)

MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration. - Mattias P. Heinrich; Mark Jenkinson; Manav Bhushan; Tahreema N. Matin; Fergus Gleeson; Michael Brady 001; Julia A. Schnabel (Medical Image Anal., 2012)

FSL. - Mark Jenkinson; Christian F. Beckmann; Timothy Edward John Behrens; Mark William Woolrich; Stephen M. Smith 001 (NeuroImage, 2012)

Assessment of physiological noise modelling methods for functional imaging of the spinal cord. - Yazhuo Kong; Mark Jenkinson; Jesper L. R. Andersson; Irene Tracey; Jonathan C. W. Brooks (NeuroImage, 2012)

Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis. - Veronica Popescu; Marco Battaglini; W. S. Hoogstrate; Sander C. J. Verfaillie; I. C. Sluimer; Ronald A. van Schijndel; Bob W. van Dijk; Keith S. Cover; Dirk L. Knol; Mark Jenkinson; Frederik Barkhof; Nicola De Stefano; et al. (NeuroImage, 2012)

Edge- and Detail-Preserving Sparse Image Representations for Deformable Registration of Chest MRI and CT Volumes. - Mattias P. Heinrich; Mark Jenkinson; Bartlomiej W. Papiez; Fergus V. Gleeson; Michael Brady 001; Julia A. Schnabel (IPMI, 2013)

Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. - Emma C. Robinson; Saâd Jbabdi; Jesper L. R. Andersson; Stephen M. Smith 001; Matthew F. Glasser; David C. Van Essen; Gregory C. Burgess; Michael P. Harms; Deanna M. Barch; Mark Jenkinson (IPMI, 2013)

The Impact of Heterogeneity and Uncertainty on Prediction of Response to Therapy Using Dynamic MRI Data. - Manav Bhushan; Julia A. Schnabel; Michael A. Chappell; Fergus Gleeson; Mark Anderson 002; Jamie Franklin; Michael Brady 001; Mark Jenkinson (MICCAI (1), 2013)

Towards Realtime Multimodal Fusion for Image-Guided Interventions Using Self-similarities. - Mattias P. Heinrich; Mark Jenkinson; Bartlomiej W. Papiez; Michael Brady 001; Julia A. Schnabel (MICCAI (1), 2013)

The minimal preprocessing pipelines for the Human Connectome Project. - Matthew F. Glasser; Stamatios N. Sotiropoulos; J. Anthony Wilson; Timothy S. Coalson; Bruce Fischl; Jesper L. R. Andersson; Junqian Xu; Saâd Jbabdi; Matthew A. Webster; Jonathan R. Polimeni; David C. Van Essen; Mark Jenkinson (NeuroImage, 2013)

Human Connectome Project informatics: Quality control, database services, and data visualization. - Daniel S. Marcus; Michael P. Harms; Abraham Z. Snyder; Mark Jenkinson; J. Anthony Wilson; Matthew F. Glasser; Deanna M. Barch; Kevin A. Archie; Gregory C. Burgess; Mohana Ramaratnam; Michael R. Hodge; William Horton; et al. (NeuroImage, 2013)

Advances in diffusion MRI acquisition and processing in the Human Connectome Project. - Stamatios N. Sotiropoulos; Saâd Jbabdi; Junqian Xu; Jesper L. R. Andersson; Steen Moeller; Edward J. Auerbach; Matthew F. Glasser; Moisés Hernández; Guillermo Sapiro; Mark Jenkinson; David A. Feinberg; Essa Yacoub; et al. (NeuroImage, 2013)

MRF-Based Deformable Registration and Ventilation Estimation of Lung CT. - Mattias P. Heinrich; Mark Jenkinson; Michael Brady 001; Julia A. Schnabel (IEEE Trans. Medical Imaging, 2013)

Correspondences between retinotopic areas and myelin maps in human visual cortex. - Rouhollah O. Abdollahi; Hauke Kolster; Matthew F. Glasser; Emma C. Robinson; Timothy S. Coalson; Donna L. Dierker; Mark Jenkinson; David C. Van Essen; Guy A. Orban (NeuroImage, 2014)

Optimizing full-brain coverage in human brain MRI through population distributions of brain size. - Maarten Mennes; Mark Jenkinson; Romain Valabrègue; Jan K. Buitelaar; Christian F. Beckmann; Stephen M. Smith 001 (NeuroImage, 2014)

MSM: A new flexible framework for Multimodal Surface Matching. - Emma C. Robinson; Saâd Jbabdi; Matthew F. Glasser; Jesper L. R. Andersson; Gregory C. Burgess; Michael P. Harms; Stephen M. Smith 001; David C. Van Essen; Mark Jenkinson (NeuroImage, 2014)

Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention. - Cassandra Sampaio-Baptista; Jan Scholz; Mark Jenkinson; Adam G. Thomas; Nicola Filippini; Gabrielle Smit; Gwenaëlle Douaud; Heidi Johansen-Berg (NeuroImage, 2014)

Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions. - Rob H. N. Tijssen; Mark Jenkinson; Jonathan C. W. Brooks; Peter Jezzard; Karla L. Miller (NeuroImage, 2014)

Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI. - Olivia K. Faull; Mark Jenkinson; Stuart Clare; Kyle T. S. Pattinson (NeuroImage, 2015)

Large-scale Probabilistic Functional Modes from resting state fMRI. - Samuel J. Harrison; Mark W. Woolrich; Emma C. Robinson; Matthew F. Glasser; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001 (NeuroImage, 2015)

Quantitative Susceptibility Mapping by Inversion of a Perturbation Field Model: Correlation With Brain Iron in Normal Aging. - Clare B. Poynton; Mark Jenkinson; Elfar Adalsteinsson; Edith V. Sullivan; Adolf Pfefferbaum; William M. Wells III (IEEE Trans. Medical Imaging, 2015)

Construction of a neonatal cortical surface atlas using multimodal surface matching. - Jelena Bozek; Sean P. Fitzgibbon; Robert Wright; Daniel Rueckert; Mark Jenkinson; Emma C. Robinson (ISBI, 2016)

Iterative Dual LDA: A Novel Classification Algorithm for Resting State fMRI. - Zobair Arya; Ludovica Griffanti; Clare E. Mackay; Mark Jenkinson (MLMI@MICCAI, 2016)

A multi-modal parcellation of human cerebral cortex. - Matthew F. Glasser; Timothy S. Coalson; Emma C. Robinson; Carl D. Hacker; John W. Harwell; Essa Yacoub; Kâmil Ugurbil; Jesper L. R. Andersson; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001; David C. Van Essen (Nat., 2016)

Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease. - Ludovica Griffanti; Michal Rolinski; Konrad Szewczyk-Krolikowski; Ricarda A. Menke; Nicola Filippini; Giovanna Zamboni; Mark Jenkinson; Michele T. M. Hu; Clare E. Mackay (NeuroImage, 2016)

BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities. - Ludovica Griffanti; Giovanna Zamboni; Aamira Khan; Linxin Li; Guendalina Bonifacio; Vaanathi Sundaresan; Ursula G. Schulz; Wilhelm Kuker; Marco Battaglini; Peter M. Rothwell; Mark Jenkinson (NeuroImage, 2016)

Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. - Adam G. Thomas; Andrea Dennis; Nancy B. Rawlings; Charlotte J. Stagg; Lucy Matthews; Martyn Morris; Shannon H. Kolind; Sean Foxley; Mark Jenkinson; Thomas E. Nichols; Helen Dawes; Peter A. Bandettini; et al. (NeuroImage, 2016)

Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. - Eelke Visser; Max C. Keuken; Gwenaëlle Douaud; Véronique Gaura; Anne-Catherine Bachoud-Lévi; Philippe Remy; Birte U. Forstmann; Mark Jenkinson (NeuroImage, 2016)

Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age. - Eelke Visser; Max C. Keuken; Birte U. Forstmann; Mark Jenkinson (NeuroImage, 2016)

Denoising spinal cord fMRI data: Approaches to acquisition and analysis. - Falk Eippert; Yazhuo Kong; Mark Jenkinson; Irene Tracey; Jonathan C. W. Brooks (NeuroImage, 2017)

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. - Jeroen Mollink; Michiel Kleinnijenhuis; Anne-Marie van Cappellen van Walsum; Stamatios N. Sotiropoulos; Michiel Cottaar; Christopher Mirfin; Mattias P. Heinrich; Mark Jenkinson; Menuka Pallebage-Gamarallage; Olaf Ansorge; Saâd Jbabdi; Karla L. Miller (NeuroImage, 2017)

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. - Krzysztof J. Gorgolewski; Fidel Alfaro-Almagro; Tibor Auer; Pierre Bellec; Mihai Capota; M. Mallar Chakravarty; Nathan William Churchill; Alexander Li Cohen; R. Cameron Craddock; Gabriel A. Devenyi; Anders Eklund 002; Oscar Esteban; et al. (PLoS Comput. Biol., 2017)

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. - Fidel Alfaro-Almagro; Mark Jenkinson; Neal K. Bangerter; Jesper L. R. Andersson; Ludovica Griffanti; Gwenaëlle Douaud; Stamatios N. Sotiropoulos; Saâd Jbabdi; Moisés Hernández-Fernández; Emmanuel Vallée; Diego Vidaurre; Matthew A. Webster; et al. (NeuroImage, 2018)

Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults. - Ludovica Griffanti; Mark Jenkinson; Sana Suri; Eniko Zsoldos; Abda Mahmood; Nicola Filippini; Claire E. Sexton; Anya Topiwala; Charlotte Allan; Mika Kivimäki; Archana Singh-Manoux; Klaus P. Ebmeier; et al. (NeuroImage, 2018)

Spatial Warping Network for 3D Segmentation of the Hippocampus in MR Images. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (MICCAI (3), 2019)

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. - Luke Baxter; Sean P. Fitzgibbon; Fiona Moultrie; Sezgi Goksan; Mark Jenkinson; Stephen M. Smith 001; Jesper L. R. Andersson; Eugene P. Duff; Rebeccah Slater (NeuroImage, 2019)

Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. - Vaanathi Sundaresan; Ludovica Griffanti; Petya Kindalova; Fidel Alfaro-Almagro; Giovanna Zamboni; Peter M. Rothwell; Thomas E. Nichols; Mark Jenkinson (NeuroImage, 2019)

Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding. - Vaanathi Sundaresan; Giovanna Zamboni; Campbell Le Heron; Peter M. Rothwell; Masud Husain; Marco Battaglini; Nicola De Stefano; Mark Jenkinson; Ludovica Griffanti (NeuroImage, 2019)

Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework. - Antoine Saillant; Ian Armstrong; Vijay P. Shah; Sven Zühlsdorf; Charles Hayden; Jérôme Declerck; Kimberley Saint; Matthew Memmott; Mark Jenkinson; Michael A. Chappell (IEEE Trans. Medical Imaging, 2019)

Brain Tumour Segmentation Using a Triplanar Ensemble of U-Nets on MR Images. - Vaanathi Sundaresan; Ludovica Griffanti; Mark Jenkinson (BrainLes@MICCAI (1), 2020)

A 2-Step Deep Learning Method with Domain Adaptation for Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Magnetic Resonance Segmentation. - Jorge Corral Acero; Vaanathi Sundaresan; Nicola K. Dinsdale; Vicente Grau; Mark Jenkinson (M&Ms and EMIDEC/STACOM@MICCAI, 2020)

Unlearning Scanner Bias for MRI Harmonisation. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (MICCAI (2), 2020)

Unlearning Scanner Bias for MRI Harmonisation in Medical Image Segmentation. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (MIUA, 2020)

Cortical Plate Segmentation Using CNNs in 3D Fetal Ultrasound. - Madeleine K. Wyburd; Mark Jenkinson; Ana I. L. Namburete (MIUA, 2020)

The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. - Sean P. Fitzgibbon; Samuel J. Harrison; Mark Jenkinson; Luke Baxter; Emma C. Robinson; Matteo Bastiani; Jelena Bozek; Vyacheslav Karolis; Lucilio Cordero-Grande; Anthony N. Price; Emer J. Hughes; Antonios Makropoulos; et al. (NeuroImage, 2020)

Self-Supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging. - Minh-Son To; Ian G. Sarno; Chee Chong; Mark Jenkinson; Gustavo Carneiro 001 (MICCAI (7), 2021)

TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations. - Madeleine K. Wyburd; Nicola K. Dinsdale; Ana I. L. Namburete; Mark Jenkinson (MICCAI (1), 2021)

Assessment of Regional Cortical Development Through Fissure Based Gestational Age Estimation in 3D Fetal Ultrasound. - Madeleine K. Wyburd; Linde S. Hesse; Moska Aliasi; Mark Jenkinson; Aris T. Papageorghiou; Monique C. Haak; Ana I. L. Namburete (UNSURE/PIPPI@MICCAI, 2021)

Brain tumour segmentation using a triplanar ensemble of U-Nets. - Vaanathi Sundaresan; Ludovica Griffanti; Mark Jenkinson (CoRR, 2021)

Challenges for machine learning in clinical translation of big data imaging studies. - Nicola K. Dinsdale; Emma Bluemke; Vaanathi Sundaresan; Mark Jenkinson; Stephen M. Smith 001; Ana I. L. Namburete (CoRR, 2021)

Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning. - Vaanathi Sundaresan; Christoph Arthofer; Giovanna Zamboni; Robert A. Dineen; Peter M. Rothwell; Stamatios N. Sotiropoulos; Dorothee P. Auer; Daniel J. Tozer; Hugh S. Markus; Karla L. Miller; Iulius Dragonu; Nikola Sprigg; et al. (Frontiers Neuroinformatics, 2021)

Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images. - Vaanathi Sundaresan; Giovanna Zamboni; Nicola K. Dinsdale; Peter M. Rothwell; Ludovica Griffanti; Mark Jenkinson (Medical Image Anal., 2021)

Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images. - Vaanathi Sundaresan; Giovanna Zamboni; Peter M. Rothwell; Mark Jenkinson; Ludovica Griffanti (Medical Image Anal., 2021)

Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets. - Valentina Bordin; Ilaria Bertani; Irene Mattioli; Vaanathi Sundaresan; Paul McCarthy; Sana Suri; Eniko Zsoldos; Nicola Filippini; Abda Mahmood; Luca Melazzini; Maria Marcella Laganà; Giovanna Zamboni; et al. (NeuroImage, 2021)

Learning patterns of the ageing brain in MRI using deep convolutional networks. - Nicola K. Dinsdale; Emma Bluemke; Stephen M. Smith 001; Zobair Arya; Diego Vidaurre; Mark Jenkinson; Ana I. L. Namburete (NeuroImage, 2021)

Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (NeuroImage, 2021)

Mutual Information Neural Estimation for Unsupervised Multi-Modal Registration of Brain Images. - Gerard Snaauw; Michele Sasdelli; Gabriel Maicas; Stephan Lau; Johan Verjans; Mark Jenkinson; Gustavo Carneiro 001 (EMBC, 2022)

Omni-Supervised Domain Adversarial Training for White Matter Hyperintensity Segmentation in the UK Biobank. - Vaanathi Sundaresan; Nicola K. Dinsdale; Mark Jenkinson; Ludovica Griffanti (ISBI, 2022)

FedHarmony: Unlearning Scanner Bias with Distributed Data. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (MICCAI (8), 2022)

Uncertainty Categories in Medical Image Segmentation: A Study of Source-Related Diversity. - Luke Whitbread; Mark Jenkinson (UNSURE@MICCAI, 2022)

How certain are your uncertainties? - Luke Whitbread; Mark Jenkinson (CoRR, 2022)

STAMP: Simultaneous Training and Model Pruning for low data regimes in medical image segmentation. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (Medical Image Anal., 2022)

Subcortical segmentation of the fetal brain in 3D ultrasound using deep learning. - Linde S. Hesse; Moska Aliasi; Felipe Moser; Monique C. Haak; Weidi Xie; Mark Jenkinson; Ana I. L. Namburete (NeuroImage, 2022)

A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients. - Laurence Vass; M. J. Moore; Taylor Hanayik; Grant Mair; S. T. Pendlebury; Nele Demeyere; Mark Jenkinson (Neuroinformatics, 2022)

SFHarmony: Source Free Domain Adaptation for Distributed Neuroimaging Analysis. - Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (ICCV, 2023)

Improved Flexibility and Interpretability of Large Vessel Stroke Prognostication Using Image Synthesis and Multi-task Learning. - Minyan Zeng; Yutong Xie 001; Minh-Son To; Lauren Oakden-Rayner; Luke Whitbread; Stephen Bacchi; Alix Bird; Luke Smith; Rebecca Scroop; Timothy Kleinig; Jim Jannes; Lyle J. Palmer; et al. (MICCAI (5), 2023)

Segmentation method for cerebral blood vessels from MRA using hysteresis. - Georgia Kenyon; Stephan Lau; Michael A. Chappell; Mark Jenkinson (CoRR, 2023)

Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data. - István N. Huszár; Menuka Pallebage-Gamarallage; Sarah Bangerter-Christensen; Hannah Brooks; Sean P. Fitzgibbon; Sean Foxley; Marlies Hiemstra; Amy F. D. Howard; Saâd Jbabdi; Daniel Z. L. Kor; Anna Leonte; Jeroen Mollink; et al. (NeuroImage, 2023)

Automated detection of cerebral microbleeds on MR images using knowledge distillation framework. - Vaanathi Sundaresan; Christoph Arthofer; Giovanna Zamboni; Andrew G. Murchison; Robert A. Dineen; Peter M. Rothwell; Dorothee P. Auer; Chaoyue Wang; Karla L. Miller; Benjamin C. Tendler; Fidel Alfaro-Almagro; Stamatios N. Sotiropoulos; et al. (Frontiers Neuroinformatics, 2023)

Normative models for neuroimaging markers: Impact of model selection, sample size and evaluation criteria. - Jelena Bozek; Ludovica Griffanti; Stephan Lau; Mark Jenkinson (NeuroImage, 2023)

Anatomically plausible segmentations: Explicitly preserving topology through prior deformations. - Madeleine K. Wyburd; Nicola K. Dinsdale; Mark Jenkinson; Ana I. L. Namburete (Medical Image Anal., 2024)