RepeatAssembler: A Package for Annotation of Full-Length Repetitive DNA Sequences in Fungal Genomes. - Mark L. Farman; Joshua W. Gilkerson; Jerzy W. Jaromczyk; Chuck Staben (CSB, 2004)

TERMINUS - Telomeric End-Read Mining IN Unassembled Sequences. - Weixi Li; Cathryn J. Rehmeyer; Chuck Staben; Mark L. Farman (Bioinform., 2005)

TruMatch - a BLAST post-processor that identifies bona fide sequence matches to genome assemblies. - Weixi Li; Cathryn J. Rehmeyer; Chuck Staben; Mark L. Farman (Bioinform., 2005)

'PACLIMS': A component LIM system for high-throughput functional genomic analysis. - Nicole Donofrio; Ravi Rajagopalon; Douglas E. Brown; Stephen E. Diener; Donald Windham; Shelly Nolin; Anna Floyd; Thomas K. Mitchell; Natalia Galadima; Sara Tucker; Marc J. Orbach; Gayatri Patel; et al. (BMC Bioinform., 2005)

Using HPC for teaching and learning bioinformatics software: Benefits and challenges. - Tyler Parke; Mark L. Farman; Elizabeth Farnsworth; Derek Fox; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Christopher L. Schardl; Ruriko Yoshida; Patrick Calie (BMC Bioinform., 2013)

An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis. - Mark L. Farman; Patrick Calie; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Daniel R. Harris; Christopher L. Schardl (BMC Bioinform., 2014)

Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. - Eric C. Rouchka; Julia H. Chariker; Benjamin J. Harrison; Juw Won Park; Xueyuan Cao; Stanley Pounds; Susana C. Raimondi; James R. Downing; Raul C. Ribeiro; Jeffrey Rubnitz; Jatinder Lamba; Bernie J. Daigle Jr.; et al. (BMC Bioinform., 2016)

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. - Eric C. Rouchka; Julia H. Chariker; David Tieri; Juw Won Park; Shreedharkumar D. Rajurkar; Vikas Singh; Nishchal K. Verma; Yan Cui 001; Mark L. Farman; Bradford Condon; Neil Moore; Jerzy W. Jaromczyk; et al. (BMC Bioinform., 2017)