BrainTrap: a database of 3D protein expression patterns in the Drosophila brain. - Seymour Knowles-Barley; Mark Longair; J. Douglas Armstrong (Database J. Biol. Databases Curation, 2010)

A high-level 3D visualization API for Java and ImageJ. - Benjamin Schmid; Johannes E. Schindelin; Albert Cardona; Mark Longair; Martin Heisenberg (BMC Bioinform., 2010)

Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes. - Mark Longair; Dean A. Baker; J. Douglas Armstrong (Bioinform., 2011)