spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. - Chaka Tang; Josephine F. Reyes; Fabio Luciani; Andrew R. Francis; Mark M. Tanaka (Bioinform., 2008)

Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. - Josephine F. Reyes; Andrew R. Francis; Mark M. Tanaka (BMC Bioinform., 2008)

Conditions for the Evolution of Gene Clusters in Bacterial Genomes. - Sara Ballouz; Andrew R. Francis; Ruiting Lan; Mark M. Tanaka (PLoS Comput. Biol., 2010)

A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in Mycobacterium tuberculosis. - R. Zachariah Aandahl; Josephine F. Reyes; Scott A. Sisson; Mark M. Tanaka (PLoS Comput. Biol., 2012)

MGTdb: a web service and database for studying the global and local genomic epidemiology of bacterial pathogens. - Sandeep Kaur; Michael Payne; Lijuan Luo; Sophie Octavia; Mark M. Tanaka; Vitali Sintchenko; Ruiting Lan (Database J. Biol. Databases Curation, 2022)

Extinctions Caused by Host-Range Expansion. - Pei Yu; Pantea Pooladvand; Mark M. Tanaka; Lindi M. Wahl (SIAM J. Appl. Dyn. Syst., 2024)