Fos-tau-LacZ mice expose light-activated pathways in the visual system. - Ursula Greferath; Nupur Nag; Andrew J. Zele; Bang V. Bui; Yvette Wilson; Algis J. Vingrys; Mark Murphy (NeuroImage, 2004)

Stencil computation optimization and auto-tuning on state-of-the-art multicore architectures. - Kaushik Datta; Mark Murphy; Vasily Volkov; Samuel Williams 001; Jonathan Carter 002; Leonid Oliker; David A. Patterson 001; John Shalf; Katherine A. Yelick (SC, 2008)

Efficient, high-quality image contour detection. - Bryan Catanzaro; Bor-Yiing Su; Narayanan Sundaram; Yunsup Lee; Mark Murphy; Kurt Keutzer (ICCV, 2009)

Image feature extraction for mobile processors. - Mark Murphy; Kurt Keutzer; Hong Wang (IISWC, 2009)

A design methodology for domain-optimized power-efficient supercomputing. - Marghoob Mohiyuddin; Mark Murphy; Leonid Oliker; John Shalf; John Wawrzynek; Samuel Williams 001 (SC, 2009)

PALLAS: Mapping Applications onto Manycore. - Michael J. Anderson; Bryan Catanzaro; Jike Chong; Ekaterina Gonina; Kurt Keutzer; Chao-Yue Lai; Mark Murphy; Bor-Yiing Su; Narayanan Sundaram (Multiprocessor System-on-Chip, 2011)

A scalable, flexible workflow for MethylCap-seq data analysis. - Benjamin Rodriguez; Hok-Hei Tam; David Frankhouser; Michael Trimarchi; Mark Murphy; Chris Kuo; Deval Parikh; Bryan Ball; Sebastian Schwind; John Curfman; William Blum; Guido Marcucci; et al. (GENSiPS, 2011)

Considerations When Evaluating Microprocessor Platforms. - Michael J. Anderson; Bryan Catanzaro; Jike Chong; Ekaterina Gonina; Kurt Keutzer; Chao-Yue Lai; Mark Murphy; David Sheffield; Bor-Yiing Su; Narayanan Sundaram (HotPar, 2011)

Parallelism, Patterns, and Performance in Iterative MRI Reconstruction. - Mark Murphy (2011)

Fast ℓ1-SPIRiT Compressed Sensing Parallel Imaging MRI: Scalable Parallel Implementation and Clinically Feasible Runtime. - Mark Murphy; Marcus T. Alley; James Demmel; Kurt Keutzer; Shreyas Vasanawala; Michael Lustig (IEEE Trans. Medical Imaging, 2012)

Software Profiling Options and Their Effects on Security Based Diversification. - Mark Murphy; Per Larsen; Stefan Brunthaler 001; Michael Franz (MTD@CCS, 2014)

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. - David E. Frankhouser; Mark Murphy; James S. Blachly; Jincheol Park; Mike W. Zoller; Javkhlan-Ochir Ganbat; John Curfman; John C. Byrd; Shili Lin; Guido Marcucci; Pearlly Yan; Ralf Bundschuh (Bioinform., 2014)

A Case for Data Commons: Towards Data Science as a Service. - Robert L. Grossman; Allison P. Heath; Mark Murphy; Maria T. Patterson; Walt Wells (CoRR, 2016)

A Case for Data Commons: Toward Data Science as a Service. - Robert L. Grossman; Allison P. Heath; Mark Murphy; Maria T. Patterson; Walt Wells (Comput. Sci. Eng., 2016)

A grid mapping algorithm for modeling with geometric transforms. - Ryan M. Barnett; Mark Murphy; Clayton V. Deutsch (Comput. Geosci., 2019)

Quantifying neurologic disease using biosensor measurements in-clinic and in free-living settings in multiple sclerosis. - Tanuja Chitnis; Bonnie I. Glanz; Cindy Gonzalez; Brian C. Healy; Taylor J. Saraceno; Neda Sattarnezhad; Camilo Diaz-Cruz; Mariann Polgar-Turcsanyi; Subhash Tummala; Rohit Bakshi; Vikram Bajaj; David Ben Shimol; et al. (npj Digit. Medicine, 2019)