Using evolutionary algorithms to estimate transition rates of discrete characteristics in phylogenetic trees. - Andrew Meade; David Corne; Mark Pagel; Richard Sibly (CEC, 2001)

Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes. - Daniel Barker; Mark Pagel (PLoS Comput. Biol., 2005)

Mixture models in phylogenetic inference. - Mark Pagel; Andrew Meade (Mathematics of Evolution and Phylogeny, 2007)

Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes. - Daniel Barker; Andrew Meade; Mark Pagel (Bioinform., 2007)

Genetics: The neighbourly nature of evolution. - Mark Pagel (Nat., 2014)

An Evaluation of Thread-Safe and Contexts-Domains Features in Cray SHMEM. - Naveen Namashivayam; David Knaak; Bob Cernohous; Nick Radcliffe; Mark Pagel (OpenSHMEM, 2016)

Symmetric Memory Partitions in OpenSHMEM: A Case Study with Intel KNL. - Naveen Namashivayam; Bob Cernohous; Krishna Kandalla; Dan Pou; Joseph Robichaux; James Dinan; Mark Pagel (OpenSHMEM, 2017)

Introducing Cray OpenSHMEMX - A Modular Multi-communication Layer OpenSHMEM Implementation. - Naveen Namashivayam; Bob Cernohous; Dan Pou; Mark Pagel (OpenSHMEM, 2018)

A Modern Fortran Interface in OpenSHMEM Need for Interoperability with Parallel Fortran Using Coarrays. - Naveen Namashivayam; Bill Long; Deepak Eachempati; Bob Cernohous; Mark Pagel (ACM Trans. Parallel Comput., 2020)

Exploring GPU Stream-Aware Message Passing using Triggered Operations. - Naveen Namashivayam; Krishna Kandalla; Trey White; Nick Radcliffe; Larry Kaplan; Mark Pagel (CoRR, 2022)

Exploring Fully Offloaded GPU Stream-Aware Message Passing. - Naveen Namashivayam; Krishna Kandalla; James B. White III; Larry Kaplan; Mark Pagel (CoRR, 2023)