Epidemiological consequences of enduring strain-specific immunity requiring repeated episodes of infection. - Rebecca H. Chisholm; Nikki Sonenberg; Jake A. Lacey; Malcolm I. McDonald; Manisha Pandey; Mark R. Davies; Steven Y. C. Tong; Jodie McVernon; Nicholas Geard (PLoS Comput. Biol., 2020)

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs. - Magnus G. Jespersen; Andrew Hayes; Mark R. Davies (J. Open Source Softw., 2022)

Corekaburra: pan-genome post-processing using core gene synteny. - Magnus G. Jespersen; Andrew Hayes; Mark R. Davies (J. Open Source Softw., 2022)