Regression Approaches for Microarray Data Analysis. - Mark R. Segal; Kam D. Dahlquist; Bruce R. Conklin (J. Comput. Biol., 2003)

Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis. - Michael P. Cummings; Mark R. Segal (BMC Bioinform., 2004)

Identifying differentially expressed genes from microarray experiments via statistic synthesis. - Yee Hwa Yang; Yuanyuan Xiao; Mark R. Segal (Bioinform., 2005)

Analysis of a Splice Array Experiment Elucidates Roles of Chromatin Elongation Factor Spt4-5 in Splicing. - Yuanyuan Xiao; Yee Hwa Yang; Todd A. Burckin; Lily Shiue; Grant A. Hartzog; Mark R. Segal (PLoS Comput. Biol., 2005)

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays. - Yuanyuan Xiao; Mark R. Segal; Yee Hwa Yang; Ru-Fang Yeh (Bioinform., 2007)

Analysis of High-throughput DNA Methylation Bead Arrays Utilizing Bayesian Genotyping Algorithms. - Yuanyuan Xiao; Mark R. Segal; Eugene Andres Houseman; Joseph Wiemels; John K. Wiencke; Shichun Zheng; Margaret R. Wrensch; Brock C. Christensen; Carmen J. Marsit; Karl T. Kelsey; Heather H. Nelson; Margaret R. Karagas; et al. (BMEI (1), 2008)

On E-values for tandem MS scoring schemes. - Mark R. Segal (Bioinform., 2008)

Biological sequence classification utilizing positive and unlabeled data. - Yuanyuan Xiao; Mark R. Segal (Bioinform., 2008)

Identification of Yeast Transcriptional Regulation Networks Using Multivariate Random Forests. - Yuanyuan Xiao; Mark R. Segal (PLoS Comput. Biol., 2009)

Multivariate random forests. - Mark R. Segal; Yuanyuan Xiao (WIREs Data Mining Knowl. Discov., 2011)

Reconstruction of 3D genome architecture via a two-stage algorithm. - Mark R. Segal; Henrik Bengtsson (BMC Bioinform., 2015)

Improved accuracy assessment for 3D genome reconstructions. - Mark R. Segal; Henrik Bengtsson (BMC Bioinform., 2018)

Assessing stationary distributions derived from chromatin contact maps. - Mark R. Segal; Kipper Fletez-Brant (BMC Bioinform., 2020)

Does multi-way, long-range chromatin contact data advance 3D genome reconstruction? - Adam B. Olshen; Mark R. Segal (BMC Bioinform., 2023)