The Comparison of Structures and Sequences: Alignment, Searching and the Detection of Common Folds. - Mark S. Johnson; John P. Overington; Yvonne Edwards; Alex C. W. May; Michael A. Rodionov (HICSS (5), 1994)

An application of genetic algorithm and parallel computing method to the protein structure comparison problem. - Jukka V. Lehtonen; Konstantin A. Denessiouk; Mark S. Johnson (German Conference on Bioinformatics, 1998)

JOY: protein sequence-structure representation and analysis. - Kenji Mizuguchi; Charlotte M. Deane; Tom L. Blundell; Mark S. Johnson; John P. Overington (Bioinform., 1998)

A dissimilarity matrix between protein atom classes based on Gaussian mixtures. - Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S. Johnson (Bioinform., 2002)

A Bayesian molecular interaction library. - Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S. Johnson (J. Comput. Aided Mol. Des., 2003)

BODIL: a molecular modeling environment for structure-function analysis and drug design. - Jukka V. Lehtonen; Dan-Johan Still; Ville-Veikko Rantanen; Jan Ekholm; Dag Björklund; Zuhair Iftikhar; Mikko Huhtala; Susanna Repo; Antti Jussila; Jussi Jaakkola; Olli T. Pentikäinen; Tommi H. Nyrönen; et al. (J. Comput. Aided Mol. Des., 2004)

a Priori Contact Preferences in Molecular Recognition. - Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S. Johnson (J. Bioinform. Comput. Biol., 2005)

McQSAR: A Multiconformational Quantitative Structure-Activity Relationship Engine Driven by Genetic Algorithms. - Mikko J. Vainio; Mark S. Johnson (J. Chem. Inf. Model., 2005)

Generating Conformer Ensembles Using a Multiobjective Genetic Algorithm. - Mikko J. Vainio; Mark S. Johnson (J. Chem. Inf. Model., 2007)

Coordination of Na+ by Monoamine Ligands in Dopamine, Norepinephrine, and Serotonin Transporters. - Henri Xhaard; Vera Backstrom; Konstantin A. Denessiouk; Mark S. Johnson (J. Chem. Inf. Model., 2008)

ShaEP: Molecular Overlay Based on Shape and Electrostatic Potential. - Mikko J. Vainio; J. Santeri Puranen; Mark S. Johnson (J. Chem. Inf. Model., 2009)

Accurate conformation-dependent molecular electrostatic potentials for high-throughput in silico drug discovery. - J. Santeri Puranen; Mikko J. Vainio; Mark S. Johnson (J. Comput. Chem., 2010)

Submersible UV-Vis Spectroscopy for Quantifying Streamwater Organic Carbon Dynamics: Implementation and Challenges before and after Forest Harvest in a Headwater Stream. - Ashlee Jollymore; Mark S. Johnson; Iain Hawthorne (Sensors, 2012)

Plasma Protein Binding of Anisomelic Acid: Spectroscopy and Molecular Dynamic Simulations. - Rajendran Senthilkumar; Parthiban Marimuthu; Preethy Paul; Yesaiyan Manojkumar; Sankaralingam Arunachalam; John E. Eriksson; Mark S. Johnson (J. Chem. Inf. Model., 2016)

Hyperspectral and Thermal Sensing of Stomatal Conductance, Transpiration, and Photosynthesis for Soybean and Maize under Drought. - Verónica Sobejano-Paz; Teis Nørgaard Mikkelsen; Andreas Baum; Xingguo Mo; Suxia Liu; Christian Josef Köppl; Mark S. Johnson; Lorant Gulyas; Mónica García (Remote. Sens., 2020)

Drone-Based Hyperspectral and Thermal Imagery for Quantifying Upland Rice Productivity and Water Use Efficiency after Biochar Application. - Hongxiao Jin; Christian Josef Köppl; Benjamin M. C. Fischer; Johanna Rojas-Conejo; Mark S. Johnson; Laura Morillas; Steve W. Lyon; Ana M. Durán-Quesada; Andrea Suárez-Serrano; Stefano Manzoni; Mónica García (Remote. Sens., 2021)