Attribute specification for finite element models. - Mark S. Shephard; Constantine N. Tonias; Theodore J. Weidner (Comput. Graph., 1982)

Abstract data types for CAD systems. - David L. Spooner; Michael J. Wozny; Mark S. Shephard (ICRA, 1985)

The Quality of Partitions Produced by an Iterative Load Balancer. - Carlo L. Bottasso; Joseph E. Flaherty; Can C. Özturan; Mark S. Shephard; Boleslaw K. Szymanski; James D. Teresco; Louis H. Ziantz (LCR, 1995)

Predictive Load Balancing for Parallel Adaptive Finite Element Computation. - Joseph E. Flaherty; Raymond M. Loy; Mark S. Shephard; Boleslaw K. Szymanski; James D. Teresco; Louis H. Ziantz (PDPTA, 1997)

Load Balancing and Communication Optimization for Parallel Adaptive Finite Element Methods (Invited Paper). - Joseph E. Flaherty; Raymond M. Loy; P. C. Scully; Mark S. Shephard; Boleslaw K. Szymanski; James D. Teresco; Louis H. Ziantz (SCCC, 1997)

Adaptive Local Refinement with Octree Load Balancing for the Parallel Solution of Three-Dimensional Conservation Laws. - Joseph E. Flaherty; Raymond M. Loy; Mark S. Shephard; Boleslaw K. Szymanski; James D. Teresco; Louis H. Ziantz (J. Parallel Distributed Comput., 1997)

Parallel Automatic Adaptive Analysis. - Mark S. Shephard; Joseph E. Flaherty; Carlo L. Bottasso; H. L. de Cougny; Can C. Özturan; M. L. Simone (Parallel Comput., 1997)

Boundary Layer Meshing for Viscous Flows in Complex Domains. - Rao V. Garimella; Mark S. Shephard (IMR, 1998)

Revisiting the Elimination of the Adverse Effects of Small Model Features in Automatically Generated Meshes. - Mark S. Shephard; Mark W. Beall; Robert M. O'Bara (IMR, 1998)

Adaptive and Parallel Finite Element Computations on Heterogeneous Systems. - Mark W. Beall; Joseph E. Flaherty; Mark S. Shephard; James D. Teresco (PP, 1999)

An Object-Oriented Framework for Reliable Numerical Simulations. - Mark W. Beall; Mark S. Shephard (Eng. Comput., 1999)

Generation of Tetrahedral Meshes with Multiple Elements through Thin Sections. - Rao V. Garimella; Mark S. Shephard (Eng. Comput., 1999)

Towards Realistic Automated 3D Modelling of Metal Forming Problems. - Nitin V. Hattangady; Mark S. Shephard; Anil B. Chaudhary (Eng. Comput., 1999)

Algorithm Oriented Mesh Database. - Jean-François Remacle; B. Kaan Karamete; Mark S. Shephard (IMR, 2000)

On Anisotropic Mesh Generation and Quality Control in Complex Flow Problems. - Kenneth E. Jansen; Mark S. Shephard (IMR, 2001)

Towards curvilinear meshing in 3D: the case of quadratic simplices. - Saikat Dey; Robert M. O'Bara; Mark S. Shephard (Comput. Aided Des., 2001)

p-Version Mesh Generation Issues. - Xiaojuan Luo; Mark S. Shephard; Jean-François Remacle; Robert M. O'Bara; Mark W. Beall; Barna A. Szabó; Ricardo Actis (IMR, 2002)

Transient Mesh Adaptation Using Conforming and Non Conforming Mesh Modifications. - Jean-François Remacle; Xiangrong Li; Nicolas Chevaugeon; Mark S. Shephard (IMR, 2002)

Attribute Management System for Engineering Analysis. - Robert M. O'Bara; Mark W. Beall; Mark S. Shephard (Eng. Comput., 2002)

Parallel Algorithm Oriented Mesh Database. - Jean-François Remacle; Ottmar Klaas; Joseph E. Flaherty; Mark S. Shephard (Eng. Comput., 2002)

Accessing CAD Geometry for Mesh Generation. - Mark W. Beall; Joe Walsh; Mark S. Shephard (IMR, 2003)

Automated Adaptive Forming Simulations. - Jie Wan; Suleyman Kocak; Mark S. Shephard (IMR, 2003)

An Adaptive Discontinuous Galerkin Technique with an Orthogonal Basis Applied to Compressible Flow Problems. - Jean-François Remacle; Joseph E. Flaherty; Mark S. Shephard (SIAM Rev., 2003)

Anisotropic Mesh Gradation Control. - Xiangrong Li; Jean-François Remacle; Nicolas Chevaugeon; Mark S. Shephard (IMR, 2004)

A comparison of techniques for geometry access related to mesh generation. - Mark W. Beall; Joe Walsh; Mark S. Shephard (Eng. Comput., 2004)

Automatic p-version mesh generation for curved domains. - Xiaojuan Luo; Mark S. Shephard; Robert M. O'Bara; Rocco Nastasia; Mark W. Beall (Eng. Comput., 2004)

Preface. - Steven J. Owen; Mark S. Shephard (Eng. Comput., 2004)

Identifying and Meshing Thin Sections of 3-d Curved Domains. - Luzhong Yin; Xiaojuan Luo; Mark S. Shephard (IMR, 2005)

Automated adaptive 3D forming simulation processes. - Jie Wan; Suleyman Kocak; Mark S. Shephard (Eng. Comput., 2005)

Special Issue on Mesh-Based Geometric Data Processing. - Kenji Shimada; Mark S. Shephard (J. Comput. Inf. Sci. Eng., 2005)

Discontinuous Galerkin Methods Applied to Shock and Blast Problems. - Nicolas Chevaugeon; Jianguo Xin; P. Hu; Xiangrong Li; D. Cler; Joseph E. Flaherty; Mark S. Shephard (J. Sci. Comput., 2005)

Parallel anisotropic 3D mesh adaptation by mesh modification. - Frédéric Alauzet; Xiangrong Li; E. Seegyoung Seol; Mark S. Shephard (Eng. Comput., 2006)

Efficient distributed mesh data structure for parallel automated adaptive analysis. - E. Seegyoung Seol; Mark S. Shephard (Eng. Comput., 2006)

A Language-Independent API for Unstructured Mesh Access and Manipulation. - Carl Ollivier-Gooch; Lori Freitag Diachin; Mark S. Shephard; Timothy Tautges (HPCS, 2007)

An adaptive finite element method for magnetohydrodynamics. - Shrinivas Lankalapalli; Joseph E. Flaherty; Mark S. Shephard; Hank Strauss (J. Comput. Phys., 2007)

Toward a Multimodel Hierarchy to Support Multiscale Simulation. - Benjamin FrantzDale; Mark S. Shephard; E. Seegyoung Seol (Handbook of Dynamic System Modeling, 2007)

Tracking Adaptive Moving Mesh Refinements in 3D Curved Domains for Large-Scale Higher Order Finite Element Simulations. - Xiaojuan Luo; Mark S. Shephard; Lie-Quan Lee; Cho Ng; Lixin Ge (IMR, 2008)

Toward interoperable mesh, geometry and field components for PDE simulation development. - Kyle K. Chand; Lori Freitag Diachin; Xiaolin Li 002; Carl Ollivier-Gooch; E. Seegyoung Seol; Mark S. Shephard; Timothy Tautges; Harold Trease (Eng. Comput., 2008)

Adaptive boundary layer meshing for viscous flow simulations. - Onkar Sahni; Kenneth E. Jansen; Mark S. Shephard; Charles A. Taylor; Mark W. Beall (Eng. Comput., 2008)

Subdomain communication to increase scalability in large-scale scientific applications. - Aleksandr Ovcharenko; Onkar Sahni; Christopher D. Carothers; Kenneth E. Jansen; Mark S. Shephard (ICS, 2009)

Scalable implicit finite element solver for massively parallel processing with demonstration to 160K cores. - Onkar Sahni; Min Zhou; Mark S. Shephard; Kenneth E. Jansen (SC, 2009)

Multiscale computation for bioartificial soft tissues with complex geometries. - Xiaojuan Luo; Triantafyllos Stylianopoulos; Victor H. Barocas; Mark S. Shephard (Eng. Comput., 2009)

Automated adaptive cardiovascular flow simulations. - Onkar Sahni; Kenneth E. Jansen; Charles A. Taylor; Mark S. Shephard (Eng. Comput., 2009)

Strong scaling analysis of a parallel, unstructured, implicit solver and the influence of the operating system interference. - Onkar Sahni; Christopher D. Carothers; Mark S. Shephard; Kenneth E. Jansen (Sci. Program., 2009)

Scalable parallel I/O alternatives for massively parallel partitioned solver systems. - Jing Fu 002; Ning Liu 008; Onkar Sahni; Kenneth E. Jansen; Mark S. Shephard; Christopher D. Carothers (IPDPS Workshops, 2010)

Software components for parallel multiscale simulation: an example with LAMMPS. - Benjamin FrantzDale; Steven J. Plimpton; Mark S. Shephard (Eng. Comput., 2010)

Construction of near optimal meshes for 3D curved domains with thin sections and singularities for p-version method. - Xiaojuan Luo; Mark S. Shephard; Luzhong Yin; Robert M. O'Bara; Rocco Nastasia; Mark W. Beall (Eng. Comput., 2010)

Massively Parallel I/O for Partitioned Solver Systems. - Ning Liu 008; Jing Fu 002; Christopher D. Carothers; Onkar Sahni; Kenneth E. Jansen; Mark S. Shephard (Parallel Process. Lett., 2010)

Controlling Unstructured Mesh Partitions for Massively Parallel Simulations. - Min Zhou; Onkar Sahni; Karen D. Devine; Mark S. Shephard; Kenneth E. Jansen (SIAM J. Sci. Comput., 2010)

Adjacency-based data reordering algorithm for acceleration of finite element computations. - Min Zhou; Onkar Sahni; Mark S. Shephard; Christopher D. Carothers; Kenneth E. Jansen (Sci. Program., 2010)

An Interoperable, Data-Structure-Neutral Component for Mesh Query and Manipulation. - Carl Ollivier-Gooch; Lori Freitag Diachin; Mark S. Shephard; Timothy Tautges; Jason Kraftcheck; Vitus J. Leung; Xiaojuan Luo; Mark Miller (ACM Trans. Math. Softw., 2010)

Electronic poster: co-visualization of full data and in situ data extracts from unstructured grid cfd at 160k cores. - Michel E. Rasquin; Patrick Marion; Venkatram Vishwanath; Benjamin A. Matthews; Mark Hereld; Kenneth E. Jansen; Raymond M. Loy; Andrew C. Bauer; Min Zhou; Onkar Sahni; Jing Fu 002; Ning Liu 008; et al. (SC Companion, 2011)

Moving curved mesh adaptation for higher-order finite element simulations. - Xiaojuan Luo; Mark S. Shephard; Lie-Quan Lee; Lixin Ge; Cho Ng (Eng. Comput., 2011)

Parallel Curved Mesh Adaptation for Large Scale High-Order Finite Element Simulations. - Qiukai Lu; Mark S. Shephard; Saurabh Tendulkar; Mark W. Beall (IMR, 2012)

Parallel Adaptive Boundary Layer Meshing for CFD Analysis. - Aleksandr Ovcharenko; Kedar Chitale; Onkar Sahni; Kenneth E. Jansen; Mark S. Shephard (IMR, 2012)

A Parallel Unstructured Mesh Infrastructure. - E. Seegyoung Seol; Cameron W. Smith; Daniel Ibanez; Mark S. Shephard (SC Companion, 2012)

Preface - Special edition, Trends in unstructured mesh generation VII. - Steven J. Owen; Matthew L. Staten; Mark S. Shephard (Eng. Comput., 2012)

Tools to support mesh adaptation on massively parallel computers. - Min Zhou; Ting Xie; E. Seegyoung Seol; Mark S. Shephard; Onkar Sahni; Kenneth E. Jansen (Eng. Comput., 2012)

Neighborhood communication paradigm to increase scalability in large-scale dynamic scientific applications. - Aleksandr Ovcharenko; Daniel Ibanez; Fabien Delalondre; Onkar Sahni; Kenneth E. Jansen; Christopher D. Carothers; Mark S. Shephard (Parallel Comput., 2012)

Unstructured mesh partition improvement for implicit finite element at extreme scale. - Min Zhou; Onkar Sahni; Ting Xie; Mark S. Shephard; Kenneth E. Jansen (J. Supercomput., 2012)

Bringing HPC to Engineering Innovation. - Mark S. Shephard; Cameron W. Smith; John E. Kolb (Comput. Sci. Eng., 2013)

Multiphysics simulations: Challenges and opportunities. - David E. Keyes; Lois C. McInnes; Carol S. Woodward; William Gropp; Eric Myra; Michael Pernice; John B. Bell; Jed Brown; Alain Clo; Jeffrey M. Connors; Emil M. Constantinescu; Donald J. Estep; et al. (Int. J. High Perform. Comput. Appl., 2013)

A parallel ghosting algorithm for the flexible distributed mesh database. - Misbah Mubarak; E. Seegyoung Seol; Qiukai Lu; Mark S. Shephard (Sci. Program., 2013)

HPC Simulation Workflows for Engineering Innovation. - Mark S. Shephard; Cameron W. Smith (XSEDE, 2014)

Scalable Implicit Flow Solver for Realistic Wing Simulations with Flow Control. - Michel E. Rasquin; Cameron W. Smith; Kedar Chitale; E. Seegyoung Seol; Benjamin A. Matthews; Jeffrey L. Martin; Onkar Sahni; Raymond M. Loy; Mark S. Shephard; Kenneth E. Jansen (Comput. Sci. Eng., 2014)

Parallel mesh adaptation for high-order finite element methods with curved element geometry. - Qiukai Lu; Mark S. Shephard; Saurabh Tendulkar; Mark W. Beall (Eng. Comput., 2014)

Generic components for petascale adaptive unstructured mesh-based simulations. - Ting Xie; E. Seegyoung Seol; Mark S. Shephard (Eng. Comput., 2014)

Enabling HPC simulation workflows for complex industrial flow problems. - Cameron W. Smith; Steven Tran; Onkar Sahni; Farhad Behafarid; Mark S. Shephard; Raminderjeet Singh (XSEDE, 2015)

In-memory Integration of Existing Software Components for Parallel Adaptive Unstructured Mesh Workflows. - Cameron W. Smith; Brian Granzow; Dan Ibanez; Onkar Sahni; Kenneth E. Jansen; Mark S. Shephard (XSEDE, 2016)

Mesh generation for confined fusion plasma simulation. - Fan Zhang 004; Robert Hager; Seung-Hoe Ku; Choong-Seock Chang; Stephen C. Jardin; Nathaniel M. Ferraro; E. Seegyoung Seol; Eisung Yoon; Mark S. Shephard (Eng. Comput., 2016)

Hybrid MPI-thread parallelization of adaptive mesh operations. - Dan Ibanez; Ian Dunn; Mark S. Shephard (Parallel Comput., 2016)

PUMI: Parallel Unstructured Mesh Infrastructure. - Daniel Ibanez; E. Seegyoung Seol; Cameron W. Smith; Mark S. Shephard (ACM Trans. Math. Softw., 2016)

Dynamic load balancing of massively parallel unstructured meshes. - Gerrett Diamond; Cameron W. Smith; Mark S. Shephard (ScalA@SC, 2017)

Component-based workflows for parallel thermomechanical analysis of arrayed geometries. - Max O. Bloomfield; Zhen Li; Brian Granzow; Daniel Ibanez; Assad A. Oberai; Glen Hansen; Xiao Hu Liu; Mark S. Shephard (Eng. Comput., 2017)

Parallel anisotropic mesh adaptation with boundary layers for automated viscous flow simulations. - Onkar Sahni; Aleksandr Ovcharenko; Kedar Chitale; Kenneth E. Jansen; Mark S. Shephard (Eng. Comput., 2017)

Modifiable Array Data Structures for Mesh Topology. - Dan Ibanez; Mark S. Shephard (SIAM J. Sci. Comput., 2017)

In-memory integration of existing software components for parallel adaptive unstructured mesh workflows. - Cameron W. Smith; Brian Granzow; Gerrett Diamond; Daniel Ibanez; Onkar Sahni; Kenneth E. Jansen; Mark S. Shephard (Concurr. Comput. Pract. Exp., 2018)

Improving Unstructured Mesh Partitions for Multiple Criteria Using Mesh Adjacencies. - Cameron W. Smith; Michel E. Rasquin; Dan Ibanez; Kenneth E. Jansen; Mark S. Shephard (SIAM J. Sci. Comput., 2018)

Towards Accelerated Unstructured Mesh Particle-in-Cell. - Gerrett Diamond; Cameron W. Smith; Mark S. Shephard (ScalA@SC, 2019)

A locally discontinuous ALE finite element formulation for compressible phase change problems. - Yu Zhang; Anirban Chandra; Fan Yang; Ehsan Shams; Onkar Sahni; Mark S. Shephard; Assad A. Oberai (J. Comput. Phys., 2019)

An automated approach for parallel adjoint-based error estimation and mesh adaptation. - Brian Granzow; Assad A. Oberai; Mark S. Shephard (Eng. Comput., 2020)

Efficient exascale discretizations: High-order finite element methods. - Tzanio V. Kolev; Paul F. Fischer; Misun Min; Jack J. Dongarra; Jed Brown; Veselin Dobrev; Tim Warburton; Stanimire Tomov; Mark S. Shephard; Ahmad Abdelfattah; Valeria Barra; Natalie Beams; et al. (Int. J. High Perform. Comput. Appl., 2021)

model-traits: Model attribute definitions for scientific simulations in C++. - Jacob S. Merson; Mark S. Shephard (J. Open Source Softw., 2021)

PUMIPic: A mesh-based approach to unstructured mesh Particle-In-Cell on GPUs. - Gerrett Diamond; Cameron W. Smith; Chonglin Zhang; Eisung Yoon; Mark S. Shephard (J. Parallel Distributed Comput., 2021)

Adaptive workflow for simulation of RF heaters. - Morteza H. Siboni; Mark S. Shephard (Comput. Phys. Commun., 2022)

A parallel interface tracking approach for evolving geometry problems. - Fan Yang; Anirban Chandra; Yu Zhang; Saurabh Tendulkar; Rocco Nastasia; Assad A. Oberai; Mark S. Shephard; Onkar Sahni (Eng. Comput., 2022)

The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science. - Eric Suchyta; Scott Klasky; Norbert Podhorszki; Matthew Wolf; Abolaji D. Adesoji; Choong-Seock Chang; Jong Choi 001; Philip E. Davis; Julien Dominski; Stéphane Ethier; Ian T. Foster; Kai Germaschewski; et al. (Int. J. High Perform. Comput. Appl., 2022)

Benesh: a Framework for Choreographic Coordination of In Situ Workflows. - Philip E. Davis; Jacob S. Merson; Pradeep Subedi; Lee F. Ricketson; Cameron W. Smith; Mark S. Shephard; Manish Parashar (HiPC, 2023)

Defining a Cyberinfrastructure for Plasma Science and Space Weather Simulations. - Eroma Abeysinghe; Cameron W. Smith; Liang Wang 025; James Juno; Matthew Mccall; Marlon E. Pierce; Mark S. Shephard (PEARC, 2023)

Using Hierarchical Parallelism to Accelerate the Solution of Many Small Partial Differential Equations. - Jacob S. Merson; Mark S. Shephard (CoRR, 2023)

MuMFiM: Multiscale Modeling of Fibrous Materials. - Jacob S. Merson; Catalin R. Picu; Mark S. Shephard (CoRR, 2023)

Development of an unstructured mesh gyrokinetic particle-in-cell code for exascale fusion plasma simulations on GPUs. - Chonglin Zhang; Gerrett Diamond; Cameron W. Smith; Mark S. Shephard (Comput. Phys. Commun., 2023)

A 3D unstructured mesh based particle tracking code for impurity transport simulation in fusion tokamaks. - Dhyanjyoti D. Nath; Vignesh V. Srinivasaragavan; Timothy Reed Younkin; Gerrett Diamond; Cameron W. Smith; Alyssa Hayes; Mark S. Shephard; Onkar Sahni (Comput. Phys. Commun., 2023)

Modeling and meshing for tokamak edge plasma simulations. - Usman Riaz; E. Seegyoung Seol; Robert Hager; Mark S. Shephard (Comput. Phys. Commun., 2024)

A new open-source framework for multiscale modeling of fibrous materials on heterogeneous supercomputers. - Jacob S. Merson; Catalin R. Picu; Mark S. Shephard (Eng. Comput., 2024)

Unstructured mesh tools for magnetically confined fusion system simulations. - Mark S. Shephard; Jacob S. Merson; Onkar Sahni; Angel E. Castillo; Aditya Y. Joshi; Dhyanjyoti D. Nath; Usman Riaz; E. Seegyoung Seol; Cameron W. Smith; Chonglin Zhang; Mark W. Beall; Ottmar Klaas; et al. (Eng. Comput., 2024)

GPU Acceleration of Monte Carlo Tallies on Unstructured Meshes in OpenMC with PUMI-Tally. - Fuad Hasan; Cameron W. Smith; Mark S. Shephard; R. Michael Churchill; George J. Wilkie; Paul K. Romano; Patrick C. Shriwise; Jacob S. Merson (CoRR, 2025)