Pagoda: a dynamic overlay network for routing, data management, and multicasting. - Ankur Bhargava; Kishore Kothapalli; Chris Riley; Christian Scheideler; Mark Thober (SPAA, 2004)

Refactoring programs to secure information flows. - Scott F. Smith 001; Mark Thober (PLAS, 2006)

Dynamic Dependency Monitoring to Secure Information Flow. - Paritosh Shroff; Scott F. Smith 001; Mark Thober (CSF, 2007)

Improving usability of information flow security in java. - Scott F. Smith 001; Mark Thober (PLAS, 2007)

Improving coherency of runtime integrity measurement. - Mark Thober; J. Aaron Pendergrass; C. Durward McDonell (STC, 2008)

Securing information flow via dynamic capture of dependencies. - Paritosh Shroff; Scott F. Smith 001; Mark Thober (J. Comput. Secur., 2008)

Runtime Detection of Userspace Implants. - J. Aaron Pendergrass; Nathan Hull; John Clemens; Sarah C. Helble; Mark Thober; Kathleen McGill; Machon Gregory; Peter A. Loscocco (MILCOM, 2019)

Technical Report: A Toolkit for Runtime Detection of Userspace Implants. - J. Aaron Pendergrass; Nathan Hull; John Clemens; Sarah Helble; Mark Thober; Kathleen McGill; Machon Gregory; Peter A. Loscocco (CoRR, 2019)

Quantitative Toolchain Assurance. - Dennis M. Volpano; Drew Malzahn; Andrew Pareles; Mark Thober (CoRR, 2023)