A Database of Elliptic Curves - First Report. - William A. Stein; Mark Watkins (ANTS, 2002)

Computing the Modular Degree of an Elliptic Curve. - Mark Watkins (Exp. Math., 2002)

Algebraic Graph Theory. - Mark Watkins; Brian Alspach; Paul K. Stockmeyer; Krishnaiyan Thulasirarnan; Michael Doob; James G. Oxley (Handbook of Graph Theory, 2003)

Elliptic Curves of Large Rank and Small Conductor. - Noam D. Elkies; Mark Watkins (ANTS, 2004)

Real zeros of real odd Dirichlet L-functions. - Mark Watkins (Math. Comput., 2004)

Class numbers of imaginary quadratic fields. - Mark Watkins (Math. Comput., 2004)

Symmetric Powers of Elliptic Curve L-Functions. - Phil Martin; Mark Watkins (ANTS, 2006)

Some Heuristics about Elliptic Curves. - Mark Watkins (Exp. Math., 2008)

Congruent Number Theta Coefficients to 1012. - William B. Hart; Gonzalo Tornaría; Mark Watkins (ANTS, 2010)

On the Extremality of an 80-Dimensional Lattice. - Damien Stehlé; Mark Watkins (ANTS, 2010)

Magma - A Tool for Number Theory. - John Cannon; Steve Donnelly; Claus Fieker; Mark Watkins (ICMS, 2010)

High-speed Storage Nodes for the Cloud. - Nigel Edwards; Mark Watkins; Matt Gates; Alistair N. Coles; Eric Deliot; Aled Edwards; Anna Fischer; Patrick Goldsack; Tom Hancock; Donagh McCabe; Tim Reddin; J. P. Sullivan; et al. (UCC, 2011)

Move similarity analysis in chess programs. - Don Dailey; Adam Hair; Mark Watkins (Entertain. Comput., 2014)

Solved Openings in Losing Chess. - Mark Watkins (J. Int. Comput. Games Assoc., 2014)

Losing Chess: 1. e3 Wins for White. - Mark Watkins (J. Int. Comput. Games Assoc., 2017)