On the correct determination of rotational angles for twisted-profiled sweep objects. - Marko Marhl; Varol Akman (Comput. Graph., 1994)

Extensions of sweep surface constructions. - Marko Marhl; Nikola Guid; Crtomir Oblonsek; Matjaz Horvat (Comput. Graph., 1996)

Synchronization of Regular and Chaotic oscillations: the Role of Local Divergence and the Slow Passage Effect - a Case Study on calcium oscillations. - Matjaz Perc; Marko Marhl (Int. J. Bifurc. Chaos, 2004)

Role of cascades in converting oscillatory signals into stationary step-like responses. - Marko Marhl; Vladimir Grubelnik (Biosyst., 2007)

Chaos between Stochasticity and Periodicity in the Prisoner's Dilemma Game. - Marko Gosak; Marko Marhl; Matjaz Perc (Int. J. Bifurc. Chaos, 2008)

Equality of average and steady-state levels in some nonlinear models of biological oscillations. - Beate Knoke; Marko Marhl; Matjaz Perc; Stefan Schuster (Theory Biosci., 2008)

Pulmonary artery smooth muscle responses to KCl under normoxic and hypoxic conditions studied by means of a spatial network model. - Marko Gosak; Marko Marhl; Christelle Guibert; Marie Billaud; Etienne Roux (BCB, 2010)

Jensen's inequality as a tool for explaining the effect of oscillations on the average cytosolic calcium concentration. - Beate Knoke; Christian Bodenstein; Marko Marhl; Matjaz Perc; Stefan Schuster (Theory Biosci., 2010)

Modeling the Seasonal Adaptation of Circadian Clocks by Changes in the Network Structure of the Suprachiasmatic Nucleus. - Christian Bodenstein; Marko Gosak; Stefan Schuster; Marko Marhl; Matjaz Perc (PLoS Comput. Biol., 2012)

Functional Connectivity in Islets of Langerhans from Mouse Pancreas Tissue Slices. - Andraz Stozer; Marko Gosak; Jurij Dolensek; Matjaz Perc; Marko Marhl; Marjan Slak Rupnik; Dean Korosak (PLoS Comput. Biol., 2013)

Applying network theory to fables: complexity in Slovene belles-lettres for different age groups. - Rene Markovic; Marko Gosak; Matjaz Perc; Marko Marhl; Vladimir Grubelnik (J. Complex Networks, 2019)

Flexibility of enzymatic transitions as a hallmark of optimized enzyme steady-state kinetics and thermodynamics. - Marko Sterk; Rene Markovic; Marko Marhl; Ales Fajmut; Andrej Dobovisek (Comput. Biol. Chem., 2021)

Response to "Comments on the paper 'Flexibility of enzymatic transitions as a hallmark of optimized enzyme steady-state kinetics and thermodynamics'". - Marko Sterk; Rene Markovic; Marko Marhl; Ales Fajmut; Andrej Dobovisek (Comput. Biol. Chem., 2021)

NMDA receptor inhibition increases, synchronizes, and stabilizes the collective pancreatic beta cell activity: Insights through multilayer network analysis. - Marko Sterk; Lidija Krizancic Bombek; Masa Skelin Klemen; Marjan Slak Rupnik; Marko Marhl; Andraz Stozer; Marko Gosak (PLoS Comput. Biol., 2021)

What do stimulated beta cells have in common with cancer cells? - Marko Marhl (Biosyst., 2024)

The changing world dynamics of research performance. - Marko Marhl; Rene Markovic; Vladimir Grubelnik; Matjaz Perc (Scientometrics, 2025)