Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases. - Marko Srdanovic; Ulf Schenk; Michael Schwieger; Fabien Campagne (BMC Bioinform., 2005)

TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature. - Lei Shi 006; Marko Srdanovic; Thijs Beuming; Lucy Skrabanek; Jonathan A. Javitch; Harel Weinstein (BIBE, 2010)

BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets. - Kevin C. Dorff; Nyasha Chambwe; Marko Srdanovic; Fabien Campagne (Bioinform., 2010)