Subgroup Discovery in Data Sets with Multi-dimensional Responses: A Method and a Case Study in Traumatology. - Lan Umek; Blaz Zupan; Marko Toplak; Annie Morin; Jean-Hugues Chauchat; Gregor Makovec; Dragica Smrke (AIME, 2009)

On utility of gene set signatures in gene expression-based cancer class prediction. - Minca Mramor; Marko Toplak; Gregor Leban; Tomaz Curk; Janez Demsar; Blaz Zupan (MLSB, 2010)

Similarity of Transcription Profiles for Genes in Gene Sets. - Marko Toplak; Tomaz Curk; Blaz Zupan (ICANNGA (2), 2011)

Orange: data mining toolbox in python. - Janez Demsar; Tomaz Curk; Ales Erjavec; Crtomir Gorup; Tomaz Hocevar; Mitar Milutinovic; Martin Mozina; Matija Polajnar; Marko Toplak; Anze Staric; Miha Stajdohar; Lan Umek; et al. (J. Mach. Learn. Res., 2013)

Assessment of Machine Learning Reliability Methods for Quantifying the Applicability Domain of QSAR Regression Models. - Marko Toplak; Rok Mocnik; Matija Polajnar; Zoran Bosnic; Lars Carlsson; Catrin Hasselgren Arnby; Janez Demsar; Scott Boyer; Blaz Zupan; Jonna C. Stålring (J. Chem. Inf. Model., 2014)

Bridging spectroscopy and advanced molecular orientation analysis with new 4＋ angle polarization toolbox in Quasar. - Callum Gassner; Jitraporn Vongsvivut; Meguya Ryu; Soon Hock Ng; Marko Toplak; Vijayakumar Anand; Pooja Takkalkar; Mary Louise Fac; Natalie A. Sims; Bayden R. Wood; Mark J. Tobin; Saulius Juodkazis; et al. (Comput. Biol. Medicine, 2025)