Die Orientierung der Nervenfasern im menschlichen Gehirn sichtbar gemacht. - Hubertus Axer; Timo Krings; Markus Axer; Diedrich Graf v. Keyserlingk (Bildverarbeitung für die Medizin, 2001)

Signal enhancement in polarized light imaging by means of independent component analysis. - Jürgen Dammers; Markus Axer; David Gräßel; Christoph Palm; Karl Zilles; Katrin Amunts; Uwe Pietrzyk (NeuroImage, 2010)

Microstructural Analysis of Human White Matter Architecture Using Polarized Light Imaging: Views from Neuroanatomy. - Hubertus Axer; Sindy Beck; Markus Axer; Friederike Schuchardt; Jörn Heepe; Anja Flücken; Martina Axer; Andreas Prescher; Otto W. Witte (Frontiers Neuroinformatics, 2011)

High-Resolution Fiber Tract Reconstruction in the Human Brain by Means of Three-Dimensional Polarized Light Imaging. - Markus Axer; David Gräßel; Melanie Kleiner; Jürgen Dammers; Timo Dickscheid; Julia Reckfort; Tim Hütz; Björn Eiben; Uwe Pietrzyk; Karl Zilles; Katrin Amunts (Frontiers Neuroinformatics, 2011)

A novel approach to the human connectome: Ultra-high resolution mapping of fiber tracts in the brain. - Markus Axer; Katrin Amunts; David Gräßel; Christoph Palm; Jürgen Dammers; Hubertus Axer; Uwe Pietrzyk; Karl Zilles (NeuroImage, 2011)

Classification of Ambiguous Nerve Fiber Orientations in 3D Polarized Light Imaging. - Melanie Kleiner; Markus Axer; David Gräßel; Julia Reckfort; Uwe Pietrzyk; Katrin Amunts; Timo Dickscheid (MICCAI (1), 2012)

Automatic identification of gray and white matter components in polarized light imaging. - Jürgen Dammers; Lukas Breuer; Markus Axer; Melanie Kleiner; Björn Eiben; David Gräßel; Timo Dickscheid; Karl Zilles; Katrin Amunts; Nadim Joni Shah; Uwe Pietrzyk (NeuroImage, 2012)

Towards a Multiscale, High-Resolution Model of the Human Brain. - Katrin Amunts; Oliver Bücker; Markus Axer (BrainComp, 2013)

Computation of Mutual Information Metric for Image Registration on Multiple GPUs. - Andrew V. Adinetz; Jiri Kraus; Markus Axer; Marcel Huysegoms; Stefan Köhnen; Dirk Pleiter (Euro-Par Workshops, 2013)

Reconstructing a Series of Auto-Radiographic Images in Rat Brains. - Anh-Minh Huynh; Mehmet Eylem Kirlangic; Nicole Schubert; Martin Schober; Katrin Amunts; Karl Zilles; Markus Axer (Bildverarbeitung für die Medizin, 2015)

3D Reconstruction of Histological Rat Brain Images. - Nicole Schubert; Mehmet Eylem Kirlangic; Martin Schober; Anh-Minh Huynh; Katrin Amunts; Karl Zilles; Markus Axer (Bildverarbeitung für die Medizin, 2015)

Towards Large-Scale Fiber Orientation Models of the Brain - Automation and Parallelization of a Seeded Region Growing Segmentation of High-Resolution Brain Section Images. - Anna Lührs; Oliver Bücker; Markus Axer (BrainComp, 2015)

Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging. - Miriam Menzel; Markus Axer; Hans De Raedt; Kristel Michielsen (BrainComp, 2015)

Understanding fiber mixture by simulation in 3D Polarized Light Imaging. - Melanie Dohmen; Miriam Menzel; Hendrik Wiese; Julia Reckfort; Frederike Hanke; Uwe Pietrzyk; Karl Zilles; Katrin Amunts; Markus Axer (NeuroImage, 2015)

Morphing Image Masks for Stacked Histological Sections Using Laplace's Equation. - Martin Schober; Markus Axer; Marcel Huysegoms; Nicole Schubert; Katrin Amunts; Timo Dickscheid (Bildverarbeitung für die Medizin, 2016)

Visualization of Vector Fields Derived from 3D Polarized Light Imaging. - Nicole Schubert; David Gräßel; Uwe Pietrzyk; Katrin Amunts; Markus Axer (Bildverarbeitung für die Medizin, 2016)

Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain. - Sharib Ali; Karl Rohr; David Gräßel; Philipp Schlömer; Katrin Amunts; Roland Eils; Markus Axer; Stefan Wörz (Bildverarbeitung für die Medizin, 2017)

Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart. - Sharib Ali; Karl Rohr; Markus Axer; Katrin Amunts; Roland Eils; Stefan Wörz (ISBI, 2017)

Elastic registration of high-resolution 3D PLI data of the human brain. - Sharib Ali; Karl Rohr; Markus Axer; David Gräßel; Philipp Schlömer; Katrin Amunts; Roland Eils; Stefan Wörz (ISBI, 2017)

Interactive Level-of-Detail Visualization of 3D-Polarized Light Imaging Data Using Spherical Harmonics. - Claudia Hänel; Ali C. Demiralp; Markus Axer; David Gräßel; Bernd Hentschel 001; Torsten W. Kuhlen (EuroVis (Short Papers), 2017)

Comparison of Self-similarity Measures for Multi-modal Non-rigid Registration of 3D-PLI Brain Images. - Sharib Ali; Dehui Lin; Markus Axer; Karl Rohr (Bildverarbeitung für die Medizin, 2018)

Evaluating local features in high-resolution 3D-PLI data. - Sharib Ali; Markus Axer; Katrin Amunts; Roland Eils; Karl Rohr (ISBI, 2018)

Scale-bundle spline-based non-rigid registration for handling fissures. - Sharib Ali; Katrin Amunts; Roland Eils; Markus Axer; Karl Rohr (ISBI, 2018)

A least squares approach for the reconstruction of nerve fiber orientations from tiltable specimen experiments in 3D-PLI. - Daniel Schmitz; Katrin Amunts; Thomas Lippert; Markus Axer (ISBI, 2018)

Towards Ultra-High Resolution 3D Reconstruction of a Whole Rat Brain from 3D-PLI Data. - Sharib Ali; Martin Schober; Philipp Schlömer; Katrin Amunts; Markus Axer; Karl Rohr (CNI@MICCAI, 2018)

Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution. - Sharib Ali; Stefan Wörz; Katrin Amunts; Roland Eils; Markus Axer; Karl Rohr (NeuroImage, 2018)

Tracing of Nerve Fibers Through Brain Regions of Fiber Crossings in Reconstructed 3D-PLI Volumes. - Marius Nolden; Nicole Schubert; Daniel Schmitz; Andreas Müller 022; Markus Axer (Bildverarbeitung für die Medizin, 2019)

Efficient Construction of Geometric Nerve Fiber Models for Simulation with 3D-PLI. - Jan André Reuter; Felix Matuschke; Nicole Schubert; Markus Axer (Bildverarbeitung für die Medizin, 2019)

Independent Component Analysis for Noise and Artifact Removal in Three-Dimensional Polarized Light Imaging. - Kai Benning; Miriam Menzel; Jan André Reuter; Markus Axer (BrainComp, 2019)

Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment. - Abib Alimi; Samuel Deslauriers-Gauthier; Felix Matuschke; Daniel Schmitz; Markus Axer; Rachid Deriche (ISBI, 2019)

Parallel Particle Advection and Lagrangian Analysis for 3D-PLI Fiber Orientation Maps. - Ali C. Demiralp; Daniel Zielasko; Markus Axer; Tom Vierjahn; Torsten W. Kuhlen (LDAV, 2019)

FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain. - Jan André Reuter; Felix Matuschke; Miriam Menzel; Nicole Schubert; Kévin Ginsburger; Cyril Poupon; Katrin Amunts; Markus Axer (Int. J. Comput. Assist. Radiol. Surg., 2019)

MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres. - Kévin Ginsburger; Felix Matuschke; Fabrice Poupon; Jean-François Mangin; Markus Axer; Cyril Poupon (NeuroImage, 2019)

Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging. - Abib Alimi; Samuel Deslauriers-Gauthier; Felix Matuschke; Andreas Müller 022; Sascha E. A. Muenzing; Markus Axer; Rachid Deriche (Medical Image Anal., 2020)

fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI. - Felix Matuschke; Katrin Amunts; Markus Axer (J. Open Source Softw., 2021)

Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution. - Miriam Menzel; Jan André Reuter; David Gräßel; Mike Huwer; Philipp Schlömer; Katrin Amunts; Markus Axer (NeuroImage, 2021)

GORDA: Graph-Based Orientation Distribution Analysis of SLI Scatterometry Patterns of Nerve Fibres. - Esteban Vaca; Miriam Menzel; Katrin Amunts; Markus Axer; Timo Dickscheid (ISBI, 2022)

Post mortem mapping of connectional anatomy for the validation of diffusion MRI. - Anastasia Yendiki; Manisha Aggarwal; Markus Axer; Amy F. D. Howard; Anne-Marie van Cappellen van Walsum; Suzanne N. Haber (NeuroImage, 2022)

Analyzing Regional Organization of The Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding. - Alexander Oberstraß; Jordan DeKraker; Nicola Palomero-Gallagher; Sascha E. A. Muenzing; Alan C. Evans; Markus Axer; Katrin Amunts; Timo Dickscheid (ISBI, 2024)

Self-Supervised Representation Learning for Nerve Fiber Distribution Patterns in 3D-PLI. - Alexander Oberstraß; Sascha E. A. Muenzing; Meiqi Niu; Nicola Palomero-Gallagher; Christian Schiffer; Markus Axer; Katrin Amunts; Timo Dickscheid (CoRR, 2024)

From Fibers to Cells: Fourier-Based Registration Enables Virtual Cresyl Violet Staining From 3D Polarized Light Imaging. - Alexander Oberstraß; Esteban Vaca; Eric Upschulte; Meiqi Niu; Nicola Palomero-Gallagher; David Gräßel; Christian Schiffer; Markus Axer; Katrin Amunts; Timo Dickscheid (CoRR, 2025)