CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure. - Jan-Oliver Janda; Markus Busch; Fabian Kück; Mikhail Porfenenko; Rainer Merkl (BMC Bioinform., 2012)

H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments. - Jan-Oliver Janda; Ajmal Popal; Jochen Bauer; Markus Busch; Michael Klocke; Wolfgang Spitzer; Jörg Keller 001; Rainer Merkl (BMC Bioinform., 2014)