Simulation and 3-D Visualization of the Intestinal Crypt. - Markus Gumbel; Oliver Werner; G. Zajicek; Hans-Peter Meinzer (ESM, 1998)

Analysis of cell migrations in C. elgans using computer simulations. - Markus Gumbel; Reinhild Schnabel; Hans-Peter Meinzer (ESM, 2000)

ALES: Cell Lineage Analysis and Mapping of Developmental Events. - Volker Braun; Ricardo B. R. Azevedo; Markus Gumbel; Paul-Michael Agapow; Armand M. Leroi; Hans-Peter Meinzer (Bioinform., 2003)

Community-driven development for computational biology at Sprints, Hackathons and Codefests. - Steffen Möller; Enis Afgan; Michael Banck; Raoul Jean Pierre Bonnal; Timothy Booth; John Chilton; Peter J. A. Cock; Markus Gumbel; Nomi L. Harris; Richard C. G. Holland; Matús Kalas; László Kaján; et al. (BMC Bioinform., 2014)

Modeling of the Urothelium with an Agent Based Approach. - Angelo Torelli; Fabian Siegel; Philipp Erben; Markus Gumbel (IWBBIO (2), 2015)

On models of the genetic code generated by binary dichotomic algorithms. - Markus Gumbel; Elena Fimmel; Alberto Danielli; Lutz Strüngmann (Biosyst., 2015)

Genetic Code Analysis Toolkit: A novel tool to explore the coding properties of the genetic code and DNA sequences. - K. Kraljic; Lutz Strüngmann; Elena Fimmel; Markus Gumbel (SoftwareX, 2018)

On comparing composition principles of long DNA sequences with those of random ones. - Elena Fimmel; Markus Gumbel; Ali Karpuzoglu; Sergey V. Petoukhov (Biosyst., 2019)

Robustness against point mutations of genetic code extensions under consideration of wobble-like effects. - Elena Fimmel; Markus Gumbel; Martin Starman; Lutz Strüngmann (Biosyst., 2021)

Codes across (life)sciences. - Robert Prinz; Philipp Bucher; Ádám Kun; Omar Paredes; Anna Aragno; Candice Shelby; Markus Gumbel; Elena Fimmel; Lutz Strüngmann (Biosyst., 2025)