Robust Disentanglement of a Few Factors at a Time. - Benjamin Estermann; Markus Marks; Mehmet Fatih Yanik (NeurIPS, 2020)

An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data. - Horea-Ioan Ioanas; Markus Marks; Clément M. Garin; Marc Dhenain; Mehmet Fatih Yanik; Markus Rudin (Frontiers Neuroinformatics, 2020)

Machine learning and statistical analysis of neuronal activity and animal behavior. - Markus Marks (2020)

An optimized registration workflow and standard geometric space for small animal brain imaging. - Horea-Ioan Ioanas; Markus Marks; Valerio Zerbi; Mehmet Fatih Yanik; Markus Rudin (NeuroImage, 2021)

Deep-learning-based identification, tracking, pose estimation and behaviour classification of interacting primates and mice in complex environments. - Markus Marks; Qiuhan Jin; Oliver Sturman; Lukas von Ziegler; Sepp Kollmorgen; Wolfger von der Behrens; Valerio Mante; Johannes Bohacek; Mehmet Fatih Yanik (Nat. Mach. Intell., 2022)

MABe22: A Multi-Species Multi-Task Benchmark for Learned Representations of Behavior. - Jennifer J. Sun; Markus Marks; Andrew Wesley Ulmer; Dipam Chakraborty; Brian Geuther; Edward Hayes; Heng Jia; Vivek Kumar; Sebastian Oleszko; Zachary Partridge; Milan Peelman; Alice Robie; et al. (ICML, 2023)

Text-Image Alignment for Diffusion-Based Perception. - Neehar Kondapaneni; Markus Marks; Manuel Knott 001; Rogério Guimarães; Pietro Perona (CVPR, 2024)

Less is More: Discovering Concise Network Explanations. - Neehar Kondapaneni; Markus Marks; Oisin Mac Aodha; Pietro Perona (CoRR, 2024)

Probing the Mid-level Vision Capabilities of Self-Supervised Learning. - Xuweiyi Chen; Markus Marks; Zezhou Cheng (CVPR, 2025)

Learning Keypoints for Multi-Agent Behavior Analysis using Self-Supervision. - Daniel Khalil; Christina Liu; Pietro Perona; Jennifer J. Sun; Markus Marks (WACV, 2025)

SAVeD: Learning to Denoise Low-SNR Video for Improved Downstream Performance. - Suzanne Stathatos; Michael Hobley; Markus Marks; Pietro Perona (CoRR, 2025)

A Closer Look at Benchmarking Self-supervised Pre-training with Image Classification. - Markus Marks; Manuel Knott 001; Neehar Kondapaneni; Elijah Cole; Thijs Defraeye; Fernando Pérez-Cruz; Pietro Perona (Int. J. Comput. Vis., 2025)