survcomp: an R/Bioconductor package for performance assessment and comparison of survival models. - Markus S. Schröder; Aedín C. Culhane; John Quackenbush; Benjamin Haibe-Kains (Bioinform., 2011)

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. - Aedín C. Culhane; Markus S. Schröder; Razvan Sultana; Shaita C. Picard; Enzo N. Martinelli; Caroline Kelly; Benjamin Haibe-Kains; Misha Kapushesky; Anne-Alyssa St Pierre; William Flahive; Kermshlise C. Picard; Daniel Gusenleitner; et al. (Nucleic Acids Res., 2012)

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface. - Markus S. Schröder; Daniel Gusenleitner; John Quackenbush; Aedín C. Culhane; Benjamin Haibe-Kains (Bioinform., 2013)

Significance Analysis of Prognostic Signatures. - Andrew H. Beck; Nicholas W. Knoblauch; Marco M. Hefti; Jennifer Kaplan; Stuart J. Schnitt; Aedín C. Culhane; Markus S. Schröder; Thomas Risch; John Quackenbush; Benjamin Haibe-Kains (PLoS Comput. Biol., 2013)

Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer. - Deena M. A. Gendoo; Natchar Ratanasirigulchai; Markus S. Schröder; Laia Paré; Joel S. Parker; Aleix Prat; Benjamin Haibe-Kains (Bioinform., 2016)

PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants. - Sebastian M. Siegner; Mehmet E. Karasu; Markus S. Schröder; Zacharias Kontarakis; Jacob E. Corn (BMC Bioinform., 2021)